Files changed (1)
+ * reading from binary PCL files created by PCL2Bin. SVMperfer has been used for Network inference and
+ * NOTE: Delimiters are tabs in all the following formats -- doxygen converts them to spaces automatically.
- * The labels file is of the format (NOTE WELL: IN ALL THE FOLLOWING FORMATS DELIMITERS ARE TABS --
+ * The label file and Test label file is assumed to have a example name (i.e. row name of input file) and
+ * its known label (-1 for negative examples and 1 for positive examples) separated with tabs. Genes
- * where the first column is the example name, the second column is the gold standard status (matching labels)
+ * where the first column is the example name, the second column is the known label (given in the label
+ * file) and the third column is the SVM prediction (soft value). Unlabelled examples are given a label
* and the third column represents k_value (for precision at k recall, but unused for the AUC error function
SVMperfer can also be used to output a model or learn a network, although currently those features are undocumented.