1. libsleipnir
  2. sleipnir

Commits

Author Commit Message Date Builds
Qian Zhu
Update DBCombiner doc
Qian Zhu
Merge
Qian Zhu
DBCombiner: Add support for CDatabase reorganization (eg transforming a 21000-file CDatabase to a 1000-file CDatabase, more genes per file) PCL2Bin: Fixed Bin-to-PCL conversion header bug
Qian Zhu
Fixed configure.ac bug created by 9b9c1e5 configure now works for Ubuntu with system-wide install of Boost
Casey Greene
Fixed hubber to return appropriate output. This should fix Issue #17 pending Arjun's testing.
Qian Zhu
Fixed bug in DBCombiner with regard to splitting/joining option
YOUNG-SUK LEE
updated svmperf documentation
Qian Zhu
Configure step: --with-boost=<path> is now recognized
arjunkrish
incendio configuration file
arjunkrish
Added two network normalization methods, an "absolute value" flag and corrected std.dev calculation for paircount in Dat2Dab
Qian Zhu
Temporary changes to SeekIterative
Qian Zhu
Added options to allow integrations of many coexpression networks
Qian Zhu
Merge
Qian Zhu
Provide methods for efficiently storing, retrieving a sparse DAB matrix (seekwriter.cpp, sparsematrix.h) Create wrapper for saving, reading sparse DAB's (SeekPrep) Create new class for iterative search (currently disabled), and sequential search that supports multiple DAB's as input instead of a CDatabase collection
YOUNG-SUK LEE
temporary ruby script to create bin files
YOUNG-SUK LEE
libsvm library fix
Qian Zhu
Fixed NormalizeDB function in seekwriter.cpp
Qian Zhu
Added error message for Dat.Open if missing quant file Made rank-normalization in SeekPrep memory efficient
Qian Zhu
Merge
Qian Zhu
Added function to rank-normalize a distance matrix
Jian Zhou
merge
Jian Zhou
restore default behavior of CSVMPERF::WriteModel
Qian Zhu
Merge
Qian Zhu
Added option in pcl.cpp to print distribution of distances (use -v 6 in Distancer) Renamed ushort to utype in seek related classes Fixed a bug in PCLServer (the location parameter -i is now working)
YOUNG-SUK LEE
merge
YOUNG-SUK LEE
add comments
YOUNG-SUK LEE
polish code
YOUNG-SUK LEE
small change
YOUNG-SUK LEE
fix bug in multiple cv runs
YOUNG-SUK LEE
multiple cv runs and negative subsampling
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