Commits

Author Commit Message Labels Comments Date
chuttenh
[svn r368] Add kmer/RC to PST merging to CCoalesceMotifLibraryImpl
chuttenh
[svn r367] Improve sequence alignment and RC/PST management in CCoalesceMotifLibrary
chuttenh
[svn r366] Add rudimentary motif merging to PSTs in COALESCE
chuttenh
[svn r365] Add large cluster balancing to CCoalesce
chuttenh
[svn r364] Improve CStatistics sum/sum squared/average/variance organization
chuttenh
[svn r363] Add motif "subtraction" to COALESCE
chuttenh
[svn r362] Add semi-functional randomziation based p-value adjustment to COALESCE
chuttenh
[svn r361] Safekeeping checkin before attempting various motif management changes
chuttenh
[svn r360] Fix a bug in the COALESCE histogram ave/std calculation
chuttenh
[svn r359] Add very simple sequence cache to speed repeated startups of COALESCE
chuttenh
[svn r358] Improve Sleipnir COALESCE performance
chuttenh
[svn r357] Fix Linux burps with COALESCE code
chuttenh
[svn r356] Fix a dumb crashing bug in MIer (missing null pointer check)
chuttenh
[svn r355] Add incremental histogram updates for big speed improvements
chuttenh
[svn r354] Improve per-gene kmer count management
chuttenh
[svn r353] Add motif/sequence tracking to COALESCE
chuttenh
[svn r352] Fix some Linux quibbles with the COALESCE additions
chuttenh
[svn r351] Add preliminary COALESCE implementation
chuttenh
[svn r350] Update to latest version of SMILE
chuttenh
[svn r349] Add 1.1 version history info
chuttenh
[svn r348] Add BNs2Txt and Mat2Txt documentation
chuttenh
[svn r346] Fix Linux cmdline.[ch]s in preparation for 1.1 tag
chuttenh
[svn r345] Fix GO parser to play nice with new versions and not complain so much
chuttenh
[svn r344] Add term-internal gene counts to DChecker
chuttenh
[svn r343] Add Linux build updates for BNs2Txt
chuttenh
[svn r342] Add configurable normalization to CDat
chuttenh
[svn r341] Fix various Linux glitches with the latest checkin
chuttenh
[svn r340] Add a gene exclusion filter to Dat2Dab
chuttenh
[svn r339] Improve BNServer organization prior to incorporating p-values
chuttenh
[svn r338] Add set connectivity background calculation to Funcaeologist
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