Commits

Author Commit Message Labels Comments Date
Qian Zhu
Merge
Qian Zhu
created parameters for SeekMiner, SeekServer:
YOUNG-SUK LEE
merge
YOUNG-SUK LEE
untrakced
YOUNG-SUK LEE
proper fetching dab files
Qian Zhu
Update SeekIterative
Qian Zhu
Merge
Qian Zhu
Added dataset weighting based on average-Z between query genes (SeekMiner)
Qian Zhu
make topological overlap calculation more efficient
Qian Zhu
Allowed SeekIterative to handle SEEK search integration from a collection of DAB files as
Qian Zhu
Added function in SeekTest to allow statistical testing of gene sets from *.db
Qian Zhu
Added function in SeekEvaluator to test signficance of dataset weights of a query
Qian Zhu
Add debug code in seekcentral.cpp
Qian Zhu
Update DBCombiner doc
Qian Zhu
Merge
Qian Zhu
DBCombiner: Add support for CDatabase reorganization (eg transforming a 21000-file CDatabase to a 1000-file CDatabase, more genes per file)
Qian Zhu
Fixed configure.ac bug created by 9b9c1e5
Casey Greene
Fixed hubber to return appropriate output. This should fix Issue #17 pending Arjun's testing.
Qian Zhu
Fixed bug in DBCombiner with regard to splitting/joining option
YOUNG-SUK LEE
updated svmperf documentation
Qian Zhu
Configure step: --with-boost=<path> is now recognized
arjunkrish
incendio configuration file
arjunkrish
Added two network normalization methods, an "absolute value" flag and corrected std.dev calculation for paircount in Dat2Dab
Qian Zhu
Temporary changes to SeekIterative
Qian Zhu
Added options to allow integrations of many coexpression networks
Qian Zhu
Merge
Qian Zhu
Provide methods for efficiently storing, retrieving a sparse DAB matrix (seekwriter.cpp, sparsematrix.h)
YOUNG-SUK LEE
temporary ruby script to create bin files
YOUNG-SUK LEE
libsvm library fix
Qian Zhu
Fixed NormalizeDB function in seekwriter.cpp
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