Author Commit Message Labels Comments Date
Qian Zhu avatarQian Zhu
Added dataset weighting based on average-Z between query genes (SeekMiner)
Qian Zhu avatarQian Zhu
make topological overlap calculation more efficient
Qian Zhu avatarQian Zhu
Allowed SeekIterative to handle SEEK search integration from a collection of DAB files as
Qian Zhu avatarQian Zhu
Added function in SeekTest to allow statistical testing of gene sets from *.db
Qian Zhu avatarQian Zhu
Added function in SeekEvaluator to test signficance of dataset weights of a query
Qian Zhu avatarQian Zhu
Add debug code in seekcentral.cpp
Qian Zhu avatarQian Zhu
Update DBCombiner doc
Qian Zhu avatarQian Zhu
Merge
Qian Zhu avatarQian Zhu
DBCombiner: Add support for CDatabase reorganization (eg transforming a 21000-file CDatabase to a 1000-file CDatabase, more genes per file)
Qian Zhu avatarQian Zhu
Fixed configure.ac bug created by 9b9c1e5
Casey Greene avatarCasey Greene
Fixed hubber to return appropriate output. This should fix Issue #17 pending Arjun's testing.
Qian Zhu avatarQian Zhu
Fixed bug in DBCombiner with regard to splitting/joining option
YOUNG-SUK LEE avatarYOUNG-SUK LEE
updated svmperf documentation
Qian Zhu avatarQian Zhu
Configure step: --with-boost=<path> is now recognized
Default avatar arjunkrish
incendio configuration file
Default avatar arjunkrish
Added two network normalization methods, an "absolute value" flag and corrected std.dev calculation for paircount in Dat2Dab
Qian Zhu avatarQian Zhu
Temporary changes to SeekIterative
Qian Zhu avatarQian Zhu
Added options to allow integrations of many coexpression networks
Qian Zhu avatarQian Zhu
Merge
Qian Zhu avatarQian Zhu
Provide methods for efficiently storing, retrieving a sparse DAB matrix (seekwriter.cpp, sparsematrix.h)
YOUNG-SUK LEE avatarYOUNG-SUK LEE
temporary ruby script to create bin files
YOUNG-SUK LEE avatarYOUNG-SUK LEE
libsvm library fix
Qian Zhu avatarQian Zhu
Fixed NormalizeDB function in seekwriter.cpp
Qian Zhu avatarQian Zhu
Added error message for Dat.Open if missing quant file
Qian Zhu avatarQian Zhu
Merge
Qian Zhu avatarQian Zhu
Added function to rank-normalize a distance matrix
Jian Zhou avatarJian Zhou
merge
Jian Zhou avatarJian Zhou
restore default behavior of CSVMPERF::WriteModel
Qian Zhu avatarQian Zhu
Merge
Qian Zhu avatarQian Zhu
Added option in pcl.cpp to print distribution of distances (use -v 6 in Distancer)
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