Commits

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Author Commit Message Labels Comments Date
Casey Greene
allow pcl format to read dabs (on load, make symmetric pcl matrix)
Branches
counter_context_options
Casey Greene
update for modified dchecker
Branches
counter_context_options
Casey Greene
reformat to ansi c
Branches
counter_context_options
Casey Greene
reformat to ansi c style
Branches
counter_context_options
Casey Greene
Add new options to counter
Branches
counter_context_options
Casey Greene
start branch for more parameters to handle counter's context specific learning
Branches
counter_context_options
Lance Parsons
Merged in lance_parsons/sleipnir_harvard_princeton_merge (pull request #1)
Chris Park
removed a single char type-o
Branches
harvard_princeton_merge
Lance Parsons
Merged Harvard changeset 445 by Curtis Huttenhower: Add absolute value criterion to CDat filtering and Dat2Graph
Branches
harvard_princeton_merge
Chris Park
Optimized by using cache the bin->posterior prob for all contexts
Chris Park
fixed a bug that failed to initialize sum of posterior for an edge
Casey Greene
blank line makes autoconf unhappy
Chris Park
Edges2Posteriors can now have a directory of xdsl files as inputs and can now calculate the edge posterior of a context-averaged network. MIed minor chages of replacing "_arg" to "_given" when used in if statements.
Chris Park
Fixed a bug that used wrong index for datasets when using start idx and end idx function
Aaron Wong
Merge
Chris Park
merge
Chris Park
merge
Casey Greene
remove tools from Maria that did not have source
mchikina
merged changes
mchikina
Added output options
mchikina
Fixed a small classification bug. The first gene of every CV round was reporting the wrong value.
mchikina
changed default map to EMapNone
mchikina
minor changes to pcl header files are now saved as text unless they have a .bin extension
Chris Park
fixed small bug
Chris Park
merged updates
Chris Park
adding support for cluster (allow index datasets)
Chris Park
merge diff
Chris Park
Added support for qdabs and cutoff based edges input
Aaron Wong
Removed duplicated OpenGenes() OpenExperiments() which used char buffers (new methods use string class). Removed GetGene() and GetExperiments().
Chris Park
updated Answerer to take a target prior and fixed genes list arg now matches the orignal documentation
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