1. libsleipnir
  2. sleipnir

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Author Commit Message Date Builds
Qian Zhu
added GetFullRow() for halfmatrix added #define DATABASE_NIBBLE around Dat.Initialize() in database.cpp changed CMeta::Quantize() to allow faster quantization (start from mid bin) added GetQuants() access method in CDataPair OpenMP parallelization support everywhere (tested for linux and for database.cpp only) (nasty hack: adding -fopenmp in SMILE_LIB in configure.ac)
Branches
parallel_data2db
Qian Zhu
new branch: parallel data2db
Branches
parallel_data2db
Qian Zhu
merge with main
Qian Zhu
Fixed bug in line 315 of database.cpp (filelist should not have c_DAB extention)
Branches
data2db
Qian Zhu
Qian's branch for Data2DB
Branches
data2db
Qian Zhu
fixed database.cpp to close file pointer m_fstm in CDatabase destructor
Qian Zhu
Data2DB: added new Open() method to allow user specify list of DAB files through command arg
Aaron Wong
Merge with main branch
Aaron Wong
Merge with main
Aaron Wong
Apply laplace smoothing consistently (whether regularization is used). This fixes a bug where datasets with alphas equal to zero (no regularizing) where not laplace smoothed.
Casey Greene
allow Data2DB to work with qdabs
Casey Greene
all changes merged into main
Casey Greene
merge counter context options
Casey Greene
merge aaron's changes
Casey Greene
Apply patch from @tjablin to build successfully without log4cpp. This closes issue #12.
Chris Park
Added functionality in SVMperfer to turn off cross-validation. Useful for small training set size (e.g. 1 example)
Jian Zhou
merged several functions for dcor calculation.
Jian Zhou
Added Distance correlation measure to Distancer
Aaron Wong
Add documentation to Quantize method; modify BNUnraveler
Aaron Wong
Modified edges2posteriors with change in how missing edges are dealt with. removed -Z options which was never used
Aaron Wong
Added Quantize method that returns -1 for an edge if a gene is missing in a dataset
Aaron Wong
Added option in Counter to output log-ratios instead of posteriors during inference
Casey Greene
Merged in libsleipnir/sleipnir/counter_context_options (pull request #2)
Casey Greene
Apply patch from @tjablin to build successfully without log4cpp. This closes issue #12.
Casey Greene
update docs with SVMperf makefile
Casey Greene
extract code repeats into function in cmeta
Casey Greene
really doesn't need to be +x
Casey Greene
fix indentation
Casey Greene
update DChecker to use new auc calcs
Casey Greene
update statistics.cpp for ubiquitous genes
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