Commits

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Author Commit Message Labels Comments Date
mchikina
minor changes to pcl header files are now saved as text unless they have a .bin extension
Chris Park
fixed small bug
Chris Park
merged updates
Chris Park
adding support for cluster (allow index datasets)
Chris Park
merge diff
Chris Park
Added support for qdabs and cutoff based edges input
Aaron Wong
Removed duplicated OpenGenes() OpenExperiments() which used char buffers (new methods use string class). Removed GetGene() and GetExperiments().
Chris Park
updated Answerer to take a target prior and fixed genes list arg now matches the orignal documentation
Chris Park
merge updates
Chris Park
merge changes
Chris Park
Added check for zero count row and zero alpha value cases
Casey Greene
With DChecker spread the edges that don't divide evenly among each bin instead of piling them all into one bin
Aaron Wong
Fixed pcl bug when opening binary files (now returns boolean on success/failure). Also checks if istream is good. Fixed DChecker bug that incorrectly calculates iChunk (should be total values/iBins+1) Fixed DChecker bug that doesn't calculate number of genes in last bin
Chris Park
corrected DChecker output column labels (PR/RC)
Aaron Wong
Update pcl.cpp to use string when opening PCL files. Performance is comparable.
Chris Park
Added arg to set all non-missing values to a default value in Dat2Dab Added arg to calculate MI for a filtered set of edges in MIed
Casey Greene
Merge
Casey Greene
Documentation for SVMperfer
Aaron Wong
Added DChecker option -l to filter positive genes
Casey Greene
Update to match bitbucket location
Casey Greene
Change documentation for NetworkCombiner to match the program.
Chris Park
Added new tool NetworkCombiner. This allows faster combining for network dabs than combiner.
Chris Park
Added "-d" directory input command, that allows along list of files to combined that exceed unix command line limit.
pkoppstein
Update README and INSTALL
ms70
improved tests for SVM and SMILE
ms70
Started document for developer instructions
ms70
detailed build options
peak
gen_tools_am: /usr/bin/env
Casey Greene
Merge
Casey Greene
Match code to documentation. This closes issue #1.
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