Commits

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Author Commit Message Labels Comments Date
Qian Zhu
Fixed bug when trying to quantize undefined values
Aaron Wong
Add zeros file option to Data2DB
Qian Zhu
merged (most of) parallel_db branch into main
Chris Park
Added new tool to convert directed Dat files into PCL, used for directed gene-gene networks
Comments 2
Qian Zhu
merge with main
Qian Zhu
Fixed bug in line 315 of database.cpp (filelist should not have c_DAB extention)
Branches
data2db
Qian Zhu
Qian's branch for Data2DB
Branches
data2db
Qian Zhu
fixed database.cpp to close file pointer m_fstm in CDatabase destructor
Qian Zhu
Data2DB: added new Open() method to allow user specify list of DAB files through command arg
Aaron Wong
Merge with main branch
Aaron Wong
Merge with main
Branches
counter_missing_zeros
Aaron Wong
Apply laplace smoothing consistently (whether regularization is used). This fixes a bug where datasets with alphas equal to zero (no regularizing) where not laplace smoothed.
Branches
counter_missing_zeros
Casey Greene
allow Data2DB to work with qdabs
Casey Greene
all changes merged into main
Branches
counter_missing_zeros
Casey Greene
merge counter context options
Casey Greene
merge aaron's changes
Casey Greene
Apply patch from @tjablin to build successfully without log4cpp. This closes issue #12.
Branches
counter_context_options
Chris Park
Added functionality in SVMperfer to turn off cross-validation. Useful for small training set size (e.g. 1 example)
Jian Zhou
merged several functions for dcor calculation.
Branches
counter_missing_zeros
Jian Zhou
Added Distance correlation measure to Distancer
Branches
counter_missing_zeros
Aaron Wong
Add documentation to Quantize method; modify BNUnraveler
Branches
counter_missing_zeros
Aaron Wong
Modified edges2posteriors with change in how missing edges are dealt with. removed -Z options which was never used
Branches
counter_missing_zeros
Aaron Wong
Added Quantize method that returns -1 for an edge if a gene is missing in a dataset
Branches
counter_missing_zeros
Aaron Wong
Added option in Counter to output log-ratios instead of posteriors during inference
Casey Greene
Merged in libsleipnir/sleipnir/counter_context_options (pull request #2)
Casey Greene
Apply patch from @tjablin to build successfully without log4cpp. This closes issue #12.
Casey Greene
update docs with SVMperf makefile
Branches
counter_context_options
Casey Greene
extract code repeats into function in cmeta
Branches
counter_context_options
Casey Greene
really doesn't need to be +x
Branches
counter_context_options
Casey Greene
fix indentation
Branches
counter_context_options
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