Commits

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Author Commit Message Labels Comments Date
Casey Greene
update DChecker to use new auc calcs
Branches
counter_context_options
Casey Greene
update statistics.cpp for ubiquitous genes
Branches
counter_context_options
Casey Greene
match function declaration changes
Branches
counter_context_options
Casey Greene
make AUC calculations in DChecker match logic
Branches
counter_context_options
Casey Greene
Update Counter and DChecker to work with ubiquitous gene lists
Branches
counter_context_options
Casey Greene
open dabs as pcls when needed, but don't dramatically alter whitespace
Branches
counter_context_options
Casey Greene
roll back previous changes (whitespace issues)
Branches
counter_context_options
Casey Greene
open dabs as pcls when needed, but don't dramatically alter whitespace
Casey Greene
roll back previous changes (whitespace issues)
Casey Greene
allow pcl format to read dabs (on load, make symmetric pcl matrix)
Comments 1
Casey Greene
allow pcl format to read dabs (on load, make symmetric pcl matrix)
Branches
counter_context_options
Casey Greene
update for modified dchecker
Branches
counter_context_options
Casey Greene
reformat to ansi c
Branches
counter_context_options
Casey Greene
reformat to ansi c style
Branches
counter_context_options
Casey Greene
Add new options to counter
Branches
counter_context_options
Casey Greene
start branch for more parameters to handle counter's context specific learning
Branches
counter_context_options
Lance Parsons
Merged in lance_parsons/sleipnir_harvard_princeton_merge (pull request #1)
Chris Park
removed a single char type-o
Branches
harvard_princeton_merge
Lance Parsons
Merged Harvard changeset 445 by Curtis Huttenhower: Add absolute value criterion to CDat filtering and Dat2Graph
Branches
harvard_princeton_merge
Chris Park
Optimized by using cache the bin->posterior prob for all contexts
Chris Park
fixed a bug that failed to initialize sum of posterior for an edge
Casey Greene
blank line makes autoconf unhappy
Chris Park
Edges2Posteriors can now have a directory of xdsl files as inputs and can now calculate the edge posterior of a context-averaged network. MIed minor chages of replacing "_arg" to "_given" when used in if statements.
Chris Park
Fixed a bug that used wrong index for datasets when using start idx and end idx function
Aaron Wong
Merge
Chris Park
merge
Chris Park
merge
Casey Greene
remove tools from Maria that did not have source
mchikina
merged changes
mchikina
Added output options
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