1. libsleipnir
  2. sleipnir

Commits

Show all
Author Commit Message Date Builds
Casey Greene
add initial set code
Branches
set-test
Casey Greene
roll back inadvertant changes to datapair
Casey Greene
fix stray hg clone in docs
Jian Zhou
Weighted context: DChecker cmdline files update
Jian Zhou
Merge
Jian Zhou
Weighted context: Added AUC calculation using weighted context for DChecker; Adjustments for reducing rounding error;
ms70
conditionally include svm library sources
Casey Greene
Have configure look in stage/lib in addition to lib, so that a user can point to /usr/local/boost_1_51_0/ instead of the less intutive /usr/local/boost_1_51_0/stage/ for with-boost
Casey Greene
update boost docs, thanks Lenny Heath
Casey Greene
missed a step for svmperf
Casey Greene
merge
Casey Greene
caps errors with SVMperf
Casey Greene
update docs, update configure to work with new smile
Jian Zhou
Merge
Jian Zhou
Weighted context: update Counter cmdline files
Jian Zhou
Weighted context: fixed genome.cpp compile issue
Casey Greene
comment line causing compile error
Jian Zhou
Weighted context: Fixed the bug that weights could be overwriten by other contexts
Jian Zhou
Merge
Jian Zhou
Weighted context: Recale final counts (divide by WT_MULTIPLIER). Allow using Dat/Dab directly as weight input.
Chris Park
Added option to remove all edges that both gene come from a user input gene list
Chris Park
Adding new tool SVMperfing, this extends SVMperfer into pair space and allows multiple dabs as input data. Also added PCL2Bin takes in PCL files output by R.
Jian Zhou
Added option of using weighted context in Counter("-W"); Each standard is counted N = weight of gene 1 * weight of gene2 * WT_MULTIPLIER (default is 50) times.
Qian Zhu
Fixed bug in Data2DB when trying -f = 5 or other small value
Aaron Wong
Add zeros file support to Data2DB
Qian Zhu
Bug fixing in database.cpp, propagated changes to the network Open() method. (now, -n should work correctly for Data2DB) Also revert change: if one-gene-per file, will NOT use gene-name as filename. File name adopts the old naming system, an 8 digit number equal to the index of the gene in the gene map. This is done mainly to reduce code complexity.
Aaron Wong
revert zeros flag changes
Aaron Wong
merge
Qian Zhu
branch merge
Qian Zhu
Fixed bug when trying to quantize undefined values (NaN)
  1. Prev
  2. Next