Commits

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Author Commit Message Labels Comments Date
chuttenh
[svn r37] Add a trie class to libBioUtils Add grouping to ELR learning to greatly improve speed Safekeeping checkin before moving over to trie grouping
chuttenh
[svn r36] Fix the ELR implementation - it might even work now!
chuttenh
[svn r35] Add initial (non-working) version of ELR algorithm (safekeeping checkin) Fix a bug when parsing zero values in a textual dat input Fix bayes net code by splitting out into separate smile, pnl, and elr files
chuttenh
[svn r32] Fix issue in libBioUtils compact matrix (shifted char must be 64 bits) Fix STL compatibility in libBioUtils bayes net conversion (map size)
chuttenh
[svn r31] Fix a gengetopt C++ bug Fix PNL's ReferenceCounter for debug mode Add (disabled) Smilearn call to libBioUtils/bayesnet Fix some cleanup stuff in BNConverter Improve dat (text) file parsing (ignores junk after first three tokens)
chuttenh
[svn r30] Fix an svn merge problem
chuttenh
[svn r29] Update everything for VS8 Add OntoTrimmer, a tool for finding the upper edge of a term set
chuttenh
[svn r28] Update Smile Linux 64-bit version Add initial .xdsl support to BNTester/BNConverter Remove weird bayes net defines from libBioUtils Fix DChecker gene list inclusion
chuttenh
[svn r26] Fix PNL problems in newest version Add gene exclusion to BNTester/CDatasetCompact
chuttenh
[svn r25] Add invert method to dats Fix a few more 64-bit issues in Txt2Bin Fix a few missing std:: namespaces in libBioUtils Update PNL to latest version Add some makefiles
chuttenh
[svn r22] Fix Txt2Bin step 3 - readd it in the new spot
chuttenh
[svn r20] Fix Txt2Bin location step one - remove old copy
chuttenh
[svn r18] Fix first pass at 64-bit compatibility
chuttenh
[svn r17] Add readline, log4cpp, and gengetopt source Add Smile Linux64 libraries Fix Linux compilation issues
chuttenh
[svn r16] Fix Smile/PNL learning in the case of missing answers Improve dab writing efficiency Improve Combiner's ability to integrate large dabs by subsetting
chuttenh
[svn r15] Improve BNConverter node murdering (randomize rather than reverse) Improve DChecker performance (2D arrays and access patterns) Fix Combiner missing data typo Add individual gene counting to GeneChecker Add randomization to bayes nets Improve dat performance (make several functions inline) Add name hashing to gene lists
chuttenh
[svn r14] Add CPT reversal to Bayes nets Add negative slim terms to BNFunc Dat/Slim opening Improve OntoShell XML request handling and server response Improve XML vacuum Windows buffering weirdness Improve OntoShell recursive term display Add ontology term processing and command line arguments to DChecker
chuttenh
[svn r13] Add floating point attribute output to XML writer Add ls and find support to OntoShell server Improve TermFinder support in OntoShell console and XML modes
chuttenh
[svn r11] Add C, gamma, and degree options to SVMs Add XML writer Add mostly working OntoShell server code Bugfix typing and inheritance in property files Improve OntoShell server/console inheritance Remove unnecessary buggy hack code from XML vacuum
chuttenh
[svn r4] Add pthreads, XML libraries, and multithreading for server classes Add randomization and gene exclusion to BNConverter Add hub/clique interaction distinction to GeneChecker Add server code skeleton to OntoShell Add much better txt/bin/dat conversion tools to Txt2Bin Gene inclusion/exclusion, etc. Add dat and binary file input to SVMer Improve SVM data handling for learning and evaluation options Add makefiles for several projects (including libBioUtils) Add XML,…
chuttenh
[svn r2]
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