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Author Commit Message Labels Comments Date
Jian Zhou
Weighted context: DChecker cmdline files update
Jian Zhou
Merge
Jian Zhou
Weighted context: Added AUC calculation using weighted context for DChecker; Adjustments for reducing rounding error;
ms70
conditionally include svm library sources
ms70
reverting to correct branch error
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ms70
conditionally include svm library sources
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Comments 1
Qian Zhu
Many changes:
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Casey Greene
Have configure look in stage/lib in addition to lib, so that a user can point to /usr/local/boost_1_51_0/ instead of the less intutive /usr/local/boost_1_51_0/stage/ for with-boost
Casey Greene
update boost docs, thanks Lenny Heath
Casey Greene
missed a step for svmperf
Casey Greene
merge
Casey Greene
caps errors with SVMperf
Casey Greene
update docs, update configure to work with new smile
Jian Zhou
Merge
Jian Zhou
Weighted context: update Counter cmdline files
Jian Zhou
Weighted context: fixed genome.cpp compile issue
Casey Greene
comment line causing compile error
Jian Zhou
Weighted context: Fixed the bug that weights could be overwriten by other contexts
Jian Zhou
Merge
Jian Zhou
Weighted context: Recale final counts (divide by WT_MULTIPLIER). Allow using Dat/Dab directly as weight input.
Chris Park
Added option to remove all edges that both gene come from a user input gene list
Chris Park
Adding new tool SVMperfing, this extends SVMperfer into pair space and allows multiple dabs as input data. Also added PCL2Bin takes in PCL files output by R.
Jian Zhou
Added option of using weighted context in Counter("-W"); Each standard is counted
Qian Zhu
Added SeekTest - T-Test and Mann-Whitney U test on significance of gene set
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Qian Zhu
SeekEvaluator - added fold over random option (so far works in aggregate mode)
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Qian Zhu
parallelized order-statistics aggregation in seekweight.cpp
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Qian Zhu
Added output-directory option to SeekMiner
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Qian Zhu
bug fixes
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Qian Zhu
merge
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Qian Zhu
merge
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