Commits

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Author Commit Message Labels Comments Date
chuttenh
[svn r142] Fix various getline paranoia null terminations Fix stupid Windows stack size bugs with large static arrays Fix (in a dumb way) a dumb problem with PCL-based DAT Get calls Improve memory usage in KNNImputer
chuttenh
[svn r141] Fix answer file modifications in DChecker
chuttenh
[svn r140] Fix some Linux issues Improve large PCL parsing (bigger buffer) Fix quantification of missing values
chuttenh
[svn r139] Fix PCL construction to be less insane with non-experimental features Improve integration of memory mapping with CDat (remove CDatMap)
chuttenh
[svn r138] Fix some Linux weirdness in mmapping
chuttenh
[svn r137] Improve memmapping code (make largely platform independent in CMeta) Add CDatMap for purely disk-based dabs
chuttenh
[svn r136] Fix some Linux bugs in BNCreator and add proper gene filtering for evaluation
chuttenh
[svn r135] Add YChecker for symmetric data set comparisons Fix return value weirdness in IBayesNet::GetNodes Add OpenGenes to the public CDatasetCompact interface Add a reference-based Get to CDat Add evaluation ability to BNCreator (loading one data set at a time)
chuttenh
[svn r134] Fix some zeroing bugs in BNCreator and Bayes net code
chuttenh
[svn r133] Add per-node zeroing to constructed Bayes nets and BNCreator Add GO annotation information and options to Explainer
chuttenh
[svn r132] Fix a screwy Linux STL bug in Seqs2Ngrams Add data set opening from answers plus dat files Fix a dumb typo in Bayes net zeroing Add Bayes net opening from data or other Bayes nets Add BNCreator for constructing/learning Bayes nets directly from dats
chuttenh
[svn r131] Add Seqs2Ngrams tool for upstream ngram analysis Add per-node zeroing properties to Smile-based Bayes net code Add rank transform to CDat Improve Euclidean and inner product measure performance Add a lousy sparse matrix class
chuttenh
[svn r130] Add inner product and binary inner product to distance measures/Distancer Add vote combination to Combiner Add some utility options to Explainer and reverse default sort (worst first) Add SSE to DChecker Add SChecker for non-binary answer sets and data set comparisons Fix Overlapper to work with non-binary data Add sigmoid calculator to math
chuttenh
[svn r129] Fix CPT normalization in Bayes net learning
chuttenh
[svn r128] Fix some SSE bugs in DChecker
chuttenh
[svn r127] Add sum of squared error to CStatistics/Distancer Improve statistics code organization a bit
chuttenh
[svn r126]
chuttenh
[svn r125] Add gene filtering to Dab2Dad (and general dad opening) Improve naive Bayesian learning fallback to defaults on low counts Add option to prevent overlapping term negatives to gene list dat creation
chuttenh
[svn r124] Add trimming of genes with too many missing values directly within KNNImputer
chuttenh
[svn r123] Improve organization of PCL to distance code in CPCL Add cloning and NaN handling to distance measures Improve PCL DAT file management (as in, it works now) Fix hierarchical clustering (again) Add a reimplementation of KNNImpute Add Explainer which lists the best (and worst) predicted genes Add limits to Distancer and KNNImputer past which caching isn't used Fix Clusters2Dat so that higher weights are stored correctly
chuttenh
[svn r122] Update several Makefiles to be static Fix pearnorm measurement centering Fix some Linux stuff in OntoShell Add min to Combiner Add zscoring to Dat2Dab
chuttenh
[svn r121] Fix correlation behavior when all entries are equal to mean Fix hierarchical clustering (hopefully) Add finite values flag and P/N counts to DChecker Add synonym output to BNFunc
chuttenh
[svn r118] Improve Pcl2Txt to exclude unused gene words
chuttenh
[svn r115] Fix more formatting problems in the Pcl2Txt output
chuttenh
[svn r112] Fix a bug in diameter scanning QTC Add normalize flag to DChecker Fix an overflow bug in WilcoxonRankSum Improve output handling in BNFunc
chuttenh
[svn r111] Fix a bug in DChecker's bin based per term analysis
chuttenh
[svn r110] Fix (partially) the gene counting in binned DChecker
chuttenh
[svn r109] Fix some annoying VS2005 issues Add bin-based distance checking to DChecker Add parameter and fuzzy clustering to Clusters2Dat
chuttenh
[svn r108] Add diameter sweeping to Cluster Fix some weirdness in QT clustering
chuttenh
[svn r107] Add Clusters2Dab for preclustered data conversion Fix a bug in KEGG parsing to properly gloss terms with multiple IDs Add better non-ID feature retrieval to PCLs
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