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Anonymous committed c7c7d37

[svn r419] Fix PCLPlotter.ggo merge issue

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tools/PCLPlotter/PCLPlotter.ggo

 								string	typestr="filename"	group="Foreground_Background"
 groupoption	"genes"			g	"Foreground gene list"
 								string	typestr="filename"	group="Foreground_Background"
-
-section "Motifs"
-option	"motifs"			m	"Known motifs to be matched"
-								string	typestr="filename"
-option	"k"					M	"Number of nucleotides per motif"
-								int	default="7"
+groupoption	"motifs"		m	"Known motif list"
+								string	typestr="filename"	group="Foreground_Background"
 
 section "Optional"
-option	"degree"			k	"Degree of HMM for sequence summary"
+option	"k"					k	"Length of motif words"
+								int	default="7"
+option	"degree"			d	"Degree of HMM for sequence summary"
 								int	default="0"
 option	"skip"				s	"Columns to skip in input PCL"
 								int	default="2"