Commits

Show all
Author Commit Message Labels Comments Date
Default avatar chuttenh
[svn r396] Fix COALESCE bug that was completely screwing up clustering statistics
Default avatar chuttenh
[svn r395] Fix a bug in Counter (extension location in quant files)
Default avatar chuttenh
[svn r394] Improve COALESCE code organization
Default avatar chuttenh
[svn r393] Add Dab2Dad option to output all values as continuous (not quantized) from DABs
Default avatar chuttenh
[svn r392] Fix memory management incompatibility with Linux in CCoalesceGeneScores
Default avatar chuttenh
[svn r391] Update Linux build and cmdline.[ch] files
Default avatar chuttenh
[svn r390] Add missing Matcher directory
Default avatar chuttenh
[svn r389] Add module merging to COALESCE
Default avatar chuttenh
[svn r388] Fix major COALESCE bug with dataset indexing in CalculateProbabilityExpression
Default avatar chuttenh
[svn r387] Add k-means clustering from precomputed weights to Clusterer/CClusterKMeans
Default avatar chuttenh
[svn r386] Fix the dumb one-liner that broke CCoalesce
Default avatar chuttenh
[svn r385] Add proper dataset block handling to CCoalesce
Default avatar chuttenh
[svn r384] Add copies of vs2008 projects in correct locations
Default avatar chuttenh
[svn r381] Add correct path for VS2008 projects
Default avatar chuttenh
[svn r380] Update Linux Makefiles, cmdlines
Default avatar chuttenh
[svn r379] Add conservation score wiggle track interface to COALESCE
Default avatar chuttenh
[svn r378] Add iterator-friendly CohensD and FTest to CStatistics
Default avatar chuttenh
[svn r377] Fix a weird compiler optimization bug in Synthesizer
Default avatar chuttenh
[svn r376] Fix COALESCE behavior when subtracting would generate negative scores
Default avatar chuttenh
[svn r375] Add ugly timing code to CCoalesce that will need to be removed
Default avatar chuttenh
[svn r374] Fix CPCL::Open leniency for nonsensical files (somewhat)
Default avatar chuttenh
[svn r373] Update Linux build files (autotools and cmdlines)
Default avatar chuttenh
[svn r372] Update Visual Studio projects to 2008
Default avatar chuttenh
[svn r371] Fix default parameter settings for SVMs
Default avatar chuttenh
[svn r370] Add dataset blocking to COALESCE
Default avatar chuttenh
[svn r369] Fix COALESCE cutoffs to prefer two end gaps to a mismatch
Default avatar chuttenh
[svn r368] Add kmer/RC to PST merging to CCoalesceMotifLibraryImpl
Default avatar chuttenh
[svn r367] Improve sequence alignment and RC/PST management in CCoalesceMotifLibrary
Default avatar chuttenh
[svn r366] Add rudimentary motif merging to PSTs in COALESCE
Default avatar chuttenh
[svn r365] Add large cluster balancing to CCoalesce
  1. Prev
  2. Next
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for ProjectModifiedEvent.java.
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.