Commits

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Author Commit Message Labels Comments Date
chuttenh
[svn r177] Add initial non-MI distance code to MIer
chuttenh
[svn r176] Add single data file processing argument to MIer
chuttenh
[svn r175] Fix mutual information calculation in MIer
chuttenh
[svn r174] Add MIer and CMeasureMutualInformation
chuttenh
[svn r173] Update GO parser to read new xref tags
chuttenh
[svn r172] Add tunable Pixie neighborhood size to CDat/Dat2Graph
chuttenh
[svn r171] Improve Pixie filtering for non-normalized graphs
chuttenh
[svn r170] Add output cutoff and missing value zeroing to Dat2Dab
chuttenh
[svn r169] Add network clipping to Hubber
chuttenh
[svn r168] Add code to analyze network/gene set hubbiness and cliquiness
chuttenh
[svn r167] Fix an interesting C++ postincrement bug in CDat
chuttenh
[svn r166] Fix some Linux compilation issues in Data2Bnt
chuttenh
[svn r165] Add quantization to CMeta (and move from PCLs)
chuttenh
[svn r164] Remove unneccesary branch
chuttenh
[svn r163] Fix prior calculations in Smile naive learning and evaluation
chuttenh
[svn r161] Branch for TFBS project
chuttenh
[svn r160] Add some makefiles
chuttenh
[svn r159] Fix a bug in PCL normalization that screwed rows with no variance
chuttenh
[svn r158] Add data masking/weighting to QTC clustering
chuttenh
[svn r157]
chuttenh
[svn r156] Add SVM training/evaluation from PCL (tabular) data
chuttenh
[svn r154] Improve BNCreator runtime by caching lines of the memmapped dabs locally
chuttenh
[svn r152] Improve BNUnraveler efficiency (hopefully)
chuttenh
[svn r151] Add memory mapping to Overlapper
chuttenh
[svn r150] Fix some minor bugs in CLI handling, Windows handle naming
chuttenh
[svn r148] Add a thread limit to BNWeaver to permit multiple thread batches per function
chuttenh
[svn r147] Add a sparse format to CDat (das) that's disk-only
chuttenh
[svn r146] Add CSparseListMatrix to complement CSparseMapMatrix
chuttenh
[svn r145] Update some references to the changed node names listing and distance classes
chuttenh
[svn r144] Add mostly empty PISAer framework for C++ PISA implementation
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