sleipnir / tools / SeekReader / stdafx.cpp

/*****************************************************************************
* This file is provided under the Creative Commons Attribution 3.0 license.
*
* You are free to share, copy, distribute, transmit, or adapt this work
* PROVIDED THAT you attribute the work to the authors listed below.
* For more information, please see the following web page:
* http://creativecommons.org/licenses/by/3.0/
*
* This file is a component of the Sleipnir library for functional genomics,
* authored by:
* Curtis Huttenhower (chuttenh@princeton.edu)
* Mark Schroeder
* Maria D. Chikina
* Olga G. Troyanskaya (ogt@princeton.edu, primary contact)
*
* If you use this library, the included executable tools, or any related
* code in your work, please cite the following publication:
* Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, and
* Olga G. Troyanskaya.
* "The Sleipnir library for computational functional genomics"
*****************************************************************************/
#include "stdafx.h"

/*!
 * \page SeekReader SeekReader
 * 
 * 
 * \section sec_usage Usage
 * 
 * \subsection ssec_usage_basic Basic Usage
 * 
 * \code
 * SeekReader -i <genes.txt> -x <db list> -d <input directory> -D <output_dir>
 * \endcode
 * 
 * 
 * \subsection ssec_usage_detailed Detailed Usage
 * 
 * \include SeekReader/SeekReader.ggo
 * 
 * <table><tr>
 *	<th>Flag</th>
 *	<th>Default</th>
 *	<th>Type</th>
 *	<th>Description</th>
 * </tr><tr>
 *	<td>-i</td>
 *	<td>stdin</td>
 *	<td>Text file</td>
 *	<td>Tab-delimited text file containing two columns, numerical gene IDs (one-based) and unique gene
 *		names (matching those in the input DAT/DAB files).</td>
 * </tr><tr>
 *	<td>-d</td>
 *	<td>.</td>
 *	<td>Directory</td>
 *	<td>Input directory containing DB files</td>
 * </tr><tr>
 *	<td>-D</td>
 *	<td>.</td>
 *	<td>Directory</td>
 *	<td>Output directory in which database files will be stored.</td>
 * </tr><tr>
 *	<td>-x</td>
 *	<td>.</td>
 *	<td>Text file</td>
 *	<td>Input file containing list of CDatabaselets to combine</td>
 * </tr></table>
 */
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for ProjectModifiedEvent.java.
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.