# sleipnir / tools / NetworkRanker / stdafx.cpp

  1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 /***************************************************************************** * This file is provided under the Creative Commons Attribution 3.0 license. * * You are free to share, copy, distribute, transmit, or adapt this work * PROVIDED THAT you attribute the work to the authors listed below. * For more information, please see the following web page: * http://creativecommons.org/licenses/by/3.0/ * * This file is a component of the Sleipnir library for functional genomics, * authored by: * Curtis Huttenhower (chuttenh@princeton.edu) * Mark Schroeder * Maria D. Chikina * Olga G. Troyanskaya (ogt@princeton.edu, primary contact) * * If you use this library, the included executable tools, or any related * code in your work, please cite the following publication: * Curtis Huttenhower, Mark Schroeder, Maria D. Chikina, and * Olga G. Troyanskaya. * "The Sleipnir library for computational functional genomics" *****************************************************************************/ #include "stdafx.h" /*! * \page NetworkRanker NetworkRanker * * NetworkRanker can replace the DAT mode of \ref Combiner. It is faster, but achieves this by making some * important assumptions. NetworkRanker uses the mean method of combining and assumes that all gene pairs * be present in all DABs being combined. Therfore, NetworkRanker should only be used if these assumptions * are met. * * \section sec_usage Usage * * \subsection ssec_usage_basic Basic Usage * * Create a new DAB file from a directory of existing DAB files by calculating the mean for each gene pair * across all of the existing DAB files. * * \code * NetworkRanker -d -o * \endcode * * \subsection ssec_usage_detailed Detailed Usage * * \include NetworkRanker/NetworkRanker.ggo * *
FlagDefaultTypeDescription
-dNoneDAT/DAB DirectoryInput directory (must only contain input files as DAT/DAB).
-monFlagMap gene index among the network dabs to combine (should be used when the gene indices are not identical among network dabs).
-oNoneDAB fileOutput file for combined network.
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