CondaHTTPError During Installation
Issue #18
new
Hi, I am installing the MAGeCK-VISPR, but I suffered some problems desipte I have tried my best to debug them. I always meet the same error during installation.
code: conda create mageck-vispr --name mageck-vispr
error information:
java-jdk-8.0.9 100% |##############################################################################################################################################################################################################################| Time: 0:01:50 1.16 MB/s java-jdk-8.0.9 100% |##############################################################################################################################################################################################################################| Time: 0:07:10 297.82 kB/s java-jdk-8.0.9 100% |##############################################################################################################################################################################################################################| Time: 0:03:09 677.34 kB/s
CondaError: CondaHTTPError: HTTP None None for url https://conda.anaconda.org/bioconda/linux-64/java-jdk-8.0.92-1.tar.bz2 Elapsed: None
An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way.
CondaError: CondaHTTPError: HTTP None None for url https://conda.anaconda.org/bioconda/linux-64/java-jdk-8.0.92-1.tar.bz2 Elapsed: None
An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way.
CondaError: CondaHTTPError: HTTP None None for url https://conda.anaconda.org/bioconda/linux-64/java-jdk-8.0.92-1.tar.bz2 Elapsed: None
An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way.
I try to search the errors by Google, but I got nothing. I conducted the check with folloing code: $ curl -I https://conda.anaconda.org/bioconda/linux-64/java-jdk-8.0.92-1.tar.bz2
HTTP/1.1 302 FOUND Date: Wed, 08 Mar 2017 09:34:04 GMT Content-Type: text/html; charset=utf-8 Connection: keep-alive Set-Cookie: __cfduid=dbe8514b156e6e012e88a1dff8f3e0bfe1488965644; expires=Thu, 08-Mar-18 09:34:04 GMT; path=/; domain=.anaconda.org; HttpOnly Location: https://binstar-cio-packages-prod.s3.amazonaws.com/562a546dab59360b0ed0666e/5798a3acfe3f5a2d67cab98f?Signature=Al6eZtYSKZXqvC3T5JWJM0ryWJA%3D&Expires=1488965704&AWSAccessKeyId=ASIAI4TIXT3FTDDUW42Q&response-content-disposition=attachment%3B%20filename%3Djava-jdk-8.0.92-1.tar.bz2&response-content-type=application/x-tar&x-amz-security-token=FQoDYXdzECYaDO3M9Rg8J7iqMKKb%2BCK3A5W5u9TRtcJ7hOXv/llIGPz%2B57%2BBe2fu3z5K4E2IxEGl69WgHS75KPpYTjZLY3dfSsd8Q6rzYDPe9b48t2OA%2BXp3Sh4BetD9dxMaz07ISjktJdnEQ3XQvGKmMX2rKP%2BdXVXdVJ%2BfyhcRQIvnpIUjcsTdA51HX2yaLz8fevkq1Btds1k8J0TglOfDVH7CQuyNjmH0AGXJjpRB5aAwIGt8vDEiVhLaU2Y7/0EZzjgCbQGyWlbAb3K2HNlEud72%2BlN42rg55FvdJHwtoCsxWuIWZc03o%2BcV7UnJHj/hQiw7jYrfFwc3qT5ibuQh72oiLYkDRaVJUZN89eNOxq%2Bwi2VTKLnfvqFk/z03BGVyNLcYELz1lGSw892a6dK/v1%2BTvmwmu4t%2BewDhyumXk9BX/P4ujl0SXlNPDto7cHsLyZxJ2Trk0cnqFP56wV0VPnP5YLp6k24ngwRFQOyi/OBd%2BGIJWetzxYXC1rxdJ2zjoxzZDvALfuW4P5FmuBfylwnCYFQv0fvTHpGlAZCA//1%2BaY%2B/pe7xEQPgWevqoCKfB207N0dQIjN5S9Qo4EjabarwjHP1qmxzXAXDwK4owZf%2BxQU%3D Set-Cookie: session=eyJfaWQiOnsiIGIiOiJaV1V4TWpZNFpUWXpZMkkwTnpBNU5UVmpaVGcxTVRsbFptSTJZMkkwWkRjPSJ9fQ.C6FhjA.VPyBflNUhHq6KScgq7KF_SncCn0; Domain=.anaconda.org; HttpOnly; Path=/ Strict-Transport-Security: max-age=31536000 Server: cloudflare-nginx CF-RAY: 33c4cbec8eb320ea-LAX
Additionaly, $ conda info -a Current conda install:
platform : linux-64
conda version : 4.3.14
conda is private : False
conda-env version : 4.3.14
conda-build version : not installed
python version : 3.6.0.final.0
requests version : 2.12.4
root environment : /home/wangzl/software/miniconda3 (writable)
default environment : /home/wangzl/software/miniconda3
envs directories : /home/wangzl/software/miniconda3/envs
/home/wangzl/.conda/envs
package cache : /home/wangzl/software/miniconda3/pkgs
/home/wangzl/.conda/pkgs
channel URLs : https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://conda.anaconda.org/r/linux-64
https://conda.anaconda.org/r/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
config file : /home/wangzl/.condarc
offline mode : False
user-agent : conda/4.3.14 requests/2.12.4 CPython/3.6.0 Linux/2.6.32-573.12.1.el6.x86_64 CentOS/6.7 glibc/2.12
UID:GID : 504:504
conda environments:
mageck-vispr /home/wangzl/software/miniconda3/envs/mageck-vispr root * /home/wangzl/software/miniconda3
sys.version: 3.6.0 |Continuum Analytics, Inc.| (defau... sys.prefix: /home/wangzl/software/miniconda3 sys.executable: /home/wangzl/software/miniconda3/bin/python conda location: /home/wangzl/software/miniconda3/lib/python3.6/site-packages/conda conda-build: None conda-env: /home/wangzl/software/miniconda3/bin/conda-env user site dirs:
CIO_TEST: <not set> CONDA_DEFAULT_ENV: <not set> CONDA_ENVS_PATH: <not set> LD_LIBRARY_PATH: /home/wangzl/software/MCRinstall/v81/runtime/glnxa64:/home/wangzl/software/MCRinstall/v81/bin/glnxa64:/home/wangzl/software/MCRinstall/v81/sys/os/glnxa64:/home/wangzl/software/MCRinstall/v81/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/home/wangzl/software/MCRinstall/v81/sys/java/jre/glnxa64/jre/lib/amd64/server:/home/wangzl/software/MCRinstall/v81/sys/java/jre/glnxa64/jre/lib/amd64 PATH: /home/wangzl/software/curl-7.53.1/curl/bin:/home/wangzl/software/miniconda3/bin:/home/software/czplib/:/home/wangzl/software/ctk:/home/software/czplib/:/home/wangzl/software/ctk:/home/wangzl/software/fastx_bin/bin:/home/wangzl/software/bwa/bwa-0.7.15:/home/wangzl/software/samtools/samtools-1.0:/home/wangzl/software/perl5.14/bin:/home/wangzl/software/miniconda3/bin:/home/software/czplib/:/home/wangzl/software/ctk:/home/software/czplib/:/home/wangzl/software/ctk:/home/wangzl/software/fastx_bin/bin:/home/wangzl/software/bwa/bwa-0.7.15:/home/wangzl/software/samtools/samtools-1.0:/home/wangzl/software/perl5.14/bin:/home/software/czplib/:/home/wangzl/software/ctk:/home/software/czplib/:/home/wangzl/software/ctk:/home/wangzl/software/fastx_bin/bin:/home/wangzl/software/bwa/bwa-0.7.15:/home/wangzl/software/samtools/samtools-1.0:/home/wangzl/software/perl5.14/bin:/usr/lib64/qt-3.3/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/wangzl/bin:/home/wangzl/software/tophat-2.0.12.Linux_x86_64:/home/wangzl/software/cufflinks-2.2.1.Linux_x86_64:/home/wangzl/software/stringtie-1.0.2.Linux_x86_64:/home/wangzl/software/R/bin:/home/wangzl/software/tablemaker-2.1.1.Linux_x86_64:/home/wangzl/software/bedtools-2.17.0/bin:/home/wangzl/software/python2.7/bin:/home/wangzl/software/BLAS:/home/wangzl/bin:/home/wangzl/software/tophat-2.0.12.Linux_x86_64:/home/wangzl/software/cufflinks-2.2.1.Linux_x86_64:/home/wangzl/software/stringtie-1.0.2.Linux_x86_64:/home/wangzl/software/R/bin:/home/wangzl/software/tablemaker-2.1.1.Linux_x86_64:/home/wangzl/software/bedtools-2.17.0/bin:/home/wangzl/software/python2.7/bin:/home/wangzl/software/BLAS:/home/wangzl/bin:/home/wangzl/software/tophat-2.0.12.Linux_x86_64:/home/wangzl/software/cufflinks-2.2.1.Linux_x86_64:/home/wangzl/software/stringtie-1.0.2.Linux_x86_64:/home/wangzl/software/R/bin:/home/wangzl/software/tablemaker-2.1.1.Linux_x86_64:/home/wangzl/software/bedtools-2.17.0/bin:/home/wangzl/software/python2.7/bin:/home/wangzl/software/BLAS PYTHONHOME: <not set> PYTHONPATH: <not set>
WARNING: could not import _license.show_info
try:
$ conda install -n root _license
I have spent much time on it, and I am really looking forward to your help. Thanks very much!
Comments (1)
Looks like a temporal conda issue. I suggest to wait a day or so, and if the error persists report it here.