Errors when running the test data

[yangyulin]

Hi, I believe that MAGeCK-VISPR is an amazing tool for me. I successfully installed it( version 0.5.3) on my Linux server, and then I tried to run it with the test data by following the video (https://www.youtube.com/watch?v=3maSxhy1JL0) and the usage(https://bitbucket.org/liulab/mageck-vispr/overview). I successfully initialized the workflow and configure it as the video do, but I still meet the following error. Could you please tell me how to fix it? Many thanks! I also checked the log file "all.log" from the folder /logs/mageck/count, and it said as following:

[changxuwang]

Actually I met the same issue on Mac system just like you! And I couldn't figure it out for several days... Have you solved this problem? Or could anyone help with this? Thanks a lot !

[yangyulin]

It seems to be the issue in .bash_profile. Usually, when we call python in the terminal, it's python 2 instead of python 3. After installing MAGeCK by conda, I can call python3 directly. However, you should also carefully check the settings PATHONPATH in .bash_profile or .bashrc. If it exists PATHONPATH that points to python2, it can report above error.My friend helped me to fixed this problem. But I met some another error when I run the test data. I'm so tired of struggling with it, so I gave it up finally~