Reads must be given as .fastq or .fastq.gz files.

Issue #30 new
EPark created an issue

I was trying initiate mageck-vispr and got this error saying the reads are not given as .fastq files, whereas the folder only has fastq files. I tried both zipped and upzipped. Could you help me resolve this error? Thank you so much!

(mageck-vispr) dp159@login02:~/workflow$ mageck-vispr init . --reads /home/dp159/reads Reads must be given as .fastq or .fastq.gz files.

(mageck-vispr) dp159@login02:~/reads$ ls 20171114_H2-Day0_EP5009_S2_R1_001.fastq.gz 20171114_H2-Day10_EP5009_S5_R1_001.fastq.gz 20171114_H2-Day10plusLSD1i_EP5009_S6_R1_001.fastq.gz 20171114_H2-Day20_EP5009_S9_R1_001.fastq.gz 20171114_H2-Day20plusLSD1i_EP5009_S10_R1_001.fastq.gz

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