divide by zero encountered -> missing values

Issue #38 new
Former user created an issue

When running the MAGeCK MLE command, I several times get an error saying a divide by zero has been encountered. After giving the error, the program continues running. At the end I get a gene summary file in which there are some missing values for a couple of genes (mainly for the wald-FDR values).

Could someone help me with this problem? Thanks in advance

Comments (2)

  1. elien

    Now that I had a further look onto it: It seems to only occur when I run an MLE analysis for more than 1 cell line. And I only get missing values for the wald-FDR of the first cell line given in the matrix.

  2. elien

    The design matrix used is the following: matrix.JPG

    So in this case, only for the wald-FDR of indWT I get missing values.

  3. Log in to comment