error running workflow

Issue #42 new
Former user created an issue

Hi,

I tried several times to run the esc-testdata, and keep on getting this error. Can you help?

Error in job mageck_mle while creating output files results/test/mle.gene_summary.txt, results/test/mle.sgrna_summary.txt. RuleException: CalledProcessError in line 212 of /Users/yt78/Downloads/esc-testdata/Snakefile: Command 'mageck mle --norm-method median --output-prefix results/test/mle --genes-var 0 --count-table results/count/all.count.txt --design-matrix /Users/yt78/Downloads/esc-testdata/designmatrix.txt 2> logs/mageck/test/mle.log' returned non-zero exit status 255. File "/Users/yt78/Downloads/esc-testdata/Snakefile", line 212, in __rule_mageck_mle File "/Users/yt78/miniconda3/lib/python3.6/concurrent/futures/thread.py", line 56, in run Will exit after finishing currently running jobs. Exiting because a job execution failed. Look above for error message

Thank you.

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