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250+ commits behind master.
adambaxter
Corrected spelling mistake for Chlamydomonas git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7562 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
adambaxter
Updated default prefs git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7480 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Fix bug with finding extension in SortTabFile. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7381 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
adambaxter
Added Phytozome.org entries. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7355 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Fixed a typo. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7331 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Change version no. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7287 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7260-7261. Show limited information in tool tip. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7262 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7251. Useq bug fixed. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7256 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7250. Use default thick height for aligned residue glyph. This fixes a display bug in BAM while showing labels. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7255 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7246. Fix updating sequence length when a new file is loaded. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7254 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7244-7245. Fixing GFF3 bug which marks file to be invalid. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7253 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7223. Fixing search GUI locking up. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7252 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7195. Fixing bar file loading. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7196 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Updating app version. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7193 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7189-7191. Fixed serving of BAM file from DAS/2. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7192 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7184. Adding new species. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7185 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7182. Renaming constants git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7183 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7180. Removing create species dir. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7181 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7173-7174. Using standard names for species. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7175 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7169. Replace white character with underscore while creating genome dir. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7170 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7165-7167. Allowing anonymous species. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7168 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7162. Fixing a bug in create genome dir. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7163 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7158. Setting tooltip delay to default. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7159 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
ido_m_tamir
removed instantiation of ensembl view from externalviewer until ensembl url issues are resolved git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7153 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Changing title to beta. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7149 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7145. Adding icon for data bookmark. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7147 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7144. Adding bp2 in determine symloader. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7145 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7142. Fixing adding of sequence for SymLoaderInst file formats. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7143 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7140. Adding load sequence action. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7141 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7137-7138. Refactoring and removing unused popup items. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7139 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7135. Load residue from popup menu. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7136 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7133. Bug fix for GUI locking on quickload server. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7134 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7131. Show track info in popup menu. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7132 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7129. Removing thread cancellation code. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7130 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7127. Adding refresh to contextual popup menu. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7128 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7115. Tiers -> Tracks. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7116 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7113. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7114 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7103-7108. Simplify SymloaderInst. Special case for SymLoaderInst. Fixed property search. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7109 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7085-7091, 7096-7102. GenBank update. Fasta parser fix. Support ftp. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7104 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7083. Removing action listener from feature table model. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7085 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7077-7081. Adding SAM symloader. Fixed gff loading/deleting. Simplified and fixed autoloading of feature from server. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7083 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7075-7076. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7077 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Mergeing changes 7067-7072. Adding genebank parser. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7074 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes of 7069. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7070 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7064-7066. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7067 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7059-7063. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7064 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Mergeing changes 7056-7058. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7060 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Merging changes 7047-7054 into branch 6.4. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7056 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
hiralv
Branching 6.4 at revision 7045. git-svn-id: http://svn.code.sf.net/p/genoviz/code/branches/igb_6_4@7047 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd