#623 Merged at d424b3c
Repository
IvoryBlak
Branch
IGBF-1380_Support_VCF4.2
Repository
lorainelab
Branch
master
Author
  1. Ivory Blakley
Reviewers
Description
  • Improve readability by removing commented code, and splitting long lines of arguments

  • Allow IGB to read VCF v4.2 and v4.3

    • This does not take advantage of any added features from these versions.
  • Remove unused code that throws errors

  • Remove inaccurate file format check

    • Code intent was that the first field must be 'GT', otherwise throw an error.
    • This is actually not a rule. The specification (v4.1) reads: "The first sub-field must always be the genotype (GT) if it is present. There are no required sub-fields."; GT may not be present
  • Commit status
  • Issues IGBF-1380

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