Commits

Author Commit Message Labels Comments Date
dawe
bugfix
dawe
default interval size set
dawe
fix in help string
dawe
Restored the possibility to annotate restriction sites without a bam file, as long as a chromosome map is given
dawe
version info
dawe
Changed input options for annotate predicate. Now only BAM files can be passed to the program.
dawe
added bedgraph for example
dawe
version info
dawe
Fixed a segfault caused by PAIRS not opening the BAM file
dawe
Fixed sanity checks to avoid segfaults
David Gomez-Cabrero
Example III
David Gomez-Cabrero
Example II
David Gomez-Cabrero
Example I
dawe
Fixed cmake files to handle cases in which bamtools headers are not in standard directories.
dawe
added bam2map.cpp
dawe
Removed the need to provide a MAP file in "eval" action.
dawe
Added a bam2map predicate that allows to create a MAP_CHRO.txt file when only BAM file is available
David Gomez-Cabrero
R script updated
David Gomez-Cabrero
ConLoc v02: working mode. Cytoscape output.
David Gomez-Cabrero
ConLoc v01
David Gomez-Cabrero
Files from Example
David Gomez-Cabrero
Output files: upstream/dowstream type of fragment end.
David Gomez-Cabrero
Update R plot script 3 & Output files
David Gomez-Cabrero
Update R plot script 2
David Gomez-Cabrero
Update R plot script
David Gomez-Cabrero
Cleaning the REsites structure. Now only used for annotation.
David Gomez-Cabrero
ADDED TWO NEW SUPPORT FILES
David Gomez-Cabrero
Add IMMAGE_ANNOTATED.r
dawe
Latest patchset from David before submission
dawe
Included latest patchset from David
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