pyteomics.pepxmltk /

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pyteomics
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pyteomics.pepxmltk - a pepXML writer and Tandem2XML converter

pyteomics.pepxmltk is a module based on the pyteomics package that allows creation of pepXML files from Python objects of a certain structure. The structure corresponds to tokens generated by the pyteomics TandemXML parser.

This package provides a module that can be used for writing pepXML files from your Python code, as well as a command-line script for conversion, merging or filtering of X!Tandem files to pepXML. Unlike its analog from Trans-Proteomic Pipeline (TPP), the script is capable of handling non-standard enzymes.

Dependencies

  • pyteomics
  • numpy
  • lxml
  • jinja2