1. Marko Toplak
  2. biox

Commits

Author Commit Message Date Builds
Gregor Rot
Last commit on 20130422 by Gregor
Gregor Rot
Biox fastqc library by Vid Jelen.
Gregor Rot
Config example.
Gregor Rot
math renamed to maths
Gregor Rot
Biox ce.
Gregor Rot
Fasta split -> generates .string files from FASTA chromosomes.
Gregor Rot
Bam statistics (expression module).
Gregor Rot
Changes to Expression (bam2wig) and Gtf data class.
Gregor Rot
New BAM -> BigWig implementation.
Gregor Rot
Expression.
Gregor Rot
Some changes to utils.
Gregor Rot
Locale problems, simply commented out the current locale setting for map/Bowtie and map/Bowtie2.
Gregor Rot
Mapper for bowtie2.
Gregor Rot
Changes to map init.
Gregor Rot
Added chisquare.
Gregor Rot
Gtf and Gff3 changes, moved interval_overlap to biox.utils.
Gregor Rot
Bowtie fasta, gene expression.
Gregor Rot
Gene expression overlap.
Gregor Rot
On mapping Fasta files, the -v option was not considered.
Gregor Rot
Reverse complement.
Gregor Rot
Fasta indexing.
Gregor Rot
process_exists bug.
Gregor Rot
Biox.utils.process_exists.
Gregor Rot
Gtf loads index (binary).
Gregor Rot
Biox.utils change.
Gregor Rot
Added os_shell parameter for biox.utils.
Gregor Rot
Sissrs output parser.
Gregor Rot
Changed processing of expression (Gtf file is now indexed).
Gregor Rot
Expression changes.
Gregor Rot
Utilities for converting bam to wig and big wig, perhaps i should move this somewhere else...
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