Michał Górny avatar Michał Górny committed 2f3797f

Fix removing partial flags using '%' action.

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 			wasflag = False
 			for f in self.flags:
 				if isinstance(f, MakeConfVariable.MakeConfFlag) and flag == f.name:
+					# set modified to clean up partial flags
+					f.modified = True
 					wasflag = True
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