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Mark Howison committed fbfc9e8 Merge

Merge branch 'master' into devel

  • Participants
  • Parent commits 1fc39c7, 2bd926a
  • Branches chloroplast, devel 3
    1. issue-6
    2. issue-7
    3. issue7a

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Files changed (1)

phix-test/00-subset-data.sh

 gunzip PhiX_S1_L001_R1_001.fastq.gz
 gunzip PhiX_S1_L001_R2_001.fastq.gz
 
-filter_illumina -i PhiX_S1_L001_R1_001.fastq -i PhiX_S1_L001_R2_001.fastq -o subset.1.fq -o subset.2.fq -n 2000 -s '/' -q 37 -a
+bl-filter-illumina -i PhiX_S1_L001_R1_001.fastq -i PhiX_S1_L001_R2_001.fastq -o subset.1.fq -o subset.2.fq -n 2000 -s '/' -q 37 -a
 
 curl "http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=9626372&extrafeat=0&maxplex=1" >phix-reference-NC_001422.fa