GABI Report (Runs 115-117)

Summary report for multiple GABI runs. Click on a Run header below for a detailed interactive trace for that run.

Run 115

Catalog IDphix
Timestamp2013-08-07T20:34:30.506613
Expected # Contigs1
Expected Genome Size5,386 bp
Burn In0
Thinning1
# Samples120,000
# Accepted14,344 (12.0%)
Total Sample Time138,902.9 sec
Min. Sample Time0.0 sec
Max. Sample Time37.2 sec
Mean Sample Time1.2 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Run 116

Catalog IDphix
Timestamp2013-08-07T20:40:39.628698
Expected # Contigs1
Expected Genome Size5,386 bp
Burn In0
Thinning1
# Samples120,000
# Accepted14,237 (11.9%)
Total Sample Time149,826.5 sec
Min. Sample Time0.0 sec
Max. Sample Time34.2 sec
Mean Sample Time1.2 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Run 117

Catalog IDphix
Timestamp2013-08-07T20:44:37.439723
Expected # Contigs1
Expected Genome Size5,386 bp
Burn In0
Thinning1
# Samples120,000
# Accepted14,913 (12.4%)
Total Sample Time153,458.9 sec
Min. Sample Time0.0 sec
Max. Sample Time58.1 sec
Mean Sample Time1.3 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

All Runs

# Samples360,000
# Accepted43,494 (12.1%)
Total Sample Time442,188.3 sec
Min. Sample Time0.0 sec
Max. Sample Time58.1 sec
Mean Sample Time1.2 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Convergence

(a) Mixing behvaior
(b) Cumulative frequencies of individual edges in each chain
(c) Average st. dev. of the cumulative edge frequencies across chains
(d) Split frequencies at the final sample