GABI Report (Runs 1-3)

Summary report for multiple GABI runs. Click on a Run header below for a detailed interactive trace for that run.

Run 1

Catalog IDphix
Timestamp2014-01-23T14:39:17.818343
Expected # Contigs1
Expected Genome Size5,386 bp
Thinning5
# Samples100,000
# Accepted8,512 (42.6%)
Total Sample Time148,501.2 sec
Min. Sample Time0.0 sec
Max. Sample Time37.0 sec
Mean Sample Time1.5 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Run 2

Catalog IDphix
Timestamp2014-01-23T14:48:47.975163
Expected # Contigs1
Expected Genome Size5,386 bp
Thinning5
# Samples100,000
# Accepted8,254 (41.3%)
Total Sample Time143,944.9 sec
Min. Sample Time0.0 sec
Max. Sample Time23.5 sec
Mean Sample Time1.4 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Run 3

Catalog IDphix
Timestamp2014-01-23T14:48:48.035338
Expected # Contigs1
Expected Genome Size5,386 bp
Thinning5
# Samples100,000
# Accepted8,438 (42.2%)
Total Sample Time150,712.5 sec
Min. Sample Time0.0 sec
Max. Sample Time35.1 sec
Mean Sample Time1.5 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

All Runs

# Samples300,000
# Accepted25,204 (42.0%)
Total Sample Time443,158.6 sec
Min. Sample Time0.0 sec
Max. Sample Time37.0 sec
Mean Sample Time1.5 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Convergence

(a) Mixing behvaior
(b) Cumulative frequencies of individual edges in each chain
(c) Average st. dev. of the cumulative edge frequencies across chains
(d) Split frequencies at the final sample