GABI Report (Runs 1-3)

Summary report for multiple GABI runs. Click on a Run header below for a detailed interactive trace for that run.

Run 1

Catalog ID phix

Timestamp 2014-05-09T13:04:07.916436

Expected # Contigs 1

Expected Genome Size 5,386 bp

# Samples 20,001

# Accepted 4,501 (22.5%)

Total Sample Time 25,514.9 sec

Min. Sample Time 0.0 sec

Max. Sample Time 8.0 sec

Mean Sample Time 1.3 sec

Posterior Distribution

Majority-Rule Consensus [FASTA]

Run 2

Catalog ID phix

Timestamp 2014-05-09T13:08:31.192148

Expected # Contigs 1

Expected Genome Size 5,386 bp

# Samples 20,001

# Accepted 4,513 (22.6%)

Total Sample Time 23,993.2 sec

Min. Sample Time 0.0 sec

Max. Sample Time 6.3 sec

Mean Sample Time 1.2 sec

Posterior Distribution

Majority-Rule Consensus [FASTA]

Run 3

Catalog ID phix

Timestamp 2014-05-09T13:12:02.507275

Expected # Contigs 1

Expected Genome Size 5,386 bp

# Samples 20,001

# Accepted 4,431 (22.2%)

Total Sample Time 25,333.5 sec

Min. Sample Time 0.0 sec

Max. Sample Time 10.1 sec

Mean Sample Time 1.3 sec

Posterior Distribution

Majority-Rule Consensus [FASTA]

All Runs

# Samples 60,003

# Accepted 13,445 (22.4%)

Total Sample Time 74,841.6 sec

Min. Sample Time 0.0 sec

Max. Sample Time 10.1 sec

Mean Sample Time 1.2 sec

Posterior Distribution

Majority-Rule Consensus [FASTA]

Convergence

(a) Mixing behvaior
(b) Cumulative frequencies of individual edges in each chain
(c) Average st. dev. of the cumulative edge frequencies across chains
(d) Split frequencies at the final sample

Node Frequencies

Node ID	Frequency	Sequence Length
74	100.0%	48
83	100.0%	462
22	100.0%	474
96	100.0%	123
51	100.0%	529
52	100.0%	15
103	100.0%	81
88	100.0%	87
85	100.0%	126
109	100.0%	483
21	99.9%	40
82	99.8%	65
19	99.7%	114
45	99.7%	17
64	99.7%	108
69	83.6%	7
57	79.3%	35
54	78.3%	61
107	78.1%	19
3	77.6%	62
49	77.5%	13
59	76.7%	67
91	75.9%	41
95	75.3%	51
108	75.3%	65
70	72.5%	21
4	72.5%	21
6	72.5%	93
5	72.5%	81
8	71.4%	66
87	70.8%	64
9	70.3%	15
101	70.1%	81
79	69.4%	15
35	66.2%	83
106	65.2%	69
84	64.9%	93
37	62.3%	75
2	62.0%	47
31	60.1%	99
26	60.0%	61
17	59.8%	23
68	59.0%	51
77	58.8%	35
16	57.7%	14
29	57.0%	32
15	56.9%	32
47	56.8%	8
89	56.5%	99
98	56.3%	14
38	55.7%	99
66	54.4%	30
24	54.2%	62
10	53.0%	99
30	51.8%	99
93	51.6%	99
58	49.5%	8
7	48.2%	99
20	48.2%	99
92	47.1%	99
105	45.1%	78
18	45.0%	7
13	44.4%	99
104	43.4%	30
94	43.3%	99
80	43.2%	18
27	43.0%	84
71	42.1%	33
73	40.1%	99
28	40.0%	8
1	39.7%	99
34	38.6%	18
72	38.2%	3
11	38.0%	18
32	37.6%	6
75	37.2%	20
97	35.9%	48
81	35.7%	26
36	35.2%	99
42	34.8%	99
90	31.9%	7
55	29.4%	99
61	29.4%	96
60	28.8%	99
41	28.8%	99
33	28.6%	1
12	27.6%	99
40	27.5%	99
67	27.5%	99
86	27.4%	99
53	27.1%	99
56	24.8%	99
99	24.2%	99
39	23.7%	99
62	23.7%	99
46	23.0%	99
50	22.4%	99
102	22.4%	97
44	21.9%	99
100	21.8%	99
43	21.3%	99
23	20.9%	99
63	20.9%	99
76	19.5%	99
14	19.1%	99
48	19.1%	99
0	19.1%	99
78	17.5%	99
25	16.8%	99
65	16.4%	99