GABI Report (Runs 1-3)

Summary report for multiple GABI runs. Click on a Run header below for a detailed interactive trace for that run.

Run 1

Catalog IDphix
Timestamp2014-05-09T13:04:07.916436
Expected # Contigs1
Expected Genome Size5,386 bp
# Samples20,001
# Accepted4,501 (22.5%)
Total Sample Time25,514.9 sec
Min. Sample Time0.0 sec
Max. Sample Time8.0 sec
Mean Sample Time1.3 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Run 2

Catalog IDphix
Timestamp2014-05-09T13:08:31.192148
Expected # Contigs1
Expected Genome Size5,386 bp
# Samples20,001
# Accepted4,513 (22.6%)
Total Sample Time23,993.2 sec
Min. Sample Time0.0 sec
Max. Sample Time6.3 sec
Mean Sample Time1.2 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Run 3

Catalog IDphix
Timestamp2014-05-09T13:12:02.507275
Expected # Contigs1
Expected Genome Size5,386 bp
# Samples20,001
# Accepted4,431 (22.2%)
Total Sample Time25,333.5 sec
Min. Sample Time0.0 sec
Max. Sample Time10.1 sec
Mean Sample Time1.3 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

All Runs

# Samples60,003
# Accepted13,445 (22.4%)
Total Sample Time74,841.6 sec
Min. Sample Time0.0 sec
Max. Sample Time10.1 sec
Mean Sample Time1.2 sec
Posterior Distribution
Majority-Rule Consensus [FASTA]

Convergence

(a) Mixing behvaior
(b) Cumulative frequencies of individual edges in each chain
(c) Average st. dev. of the cumulative edge frequencies across chains
(d) Split frequencies at the final sample

Node Frequencies

Node IDFrequencySequence Length
74100.0%48
83100.0%462
22100.0%474
96100.0%123
51100.0%529
52100.0%15
103100.0%81
88100.0%87
85100.0%126
109100.0%483
2199.9%40
8299.8%65
1999.7%114
4599.7%17
6499.7%108
6983.6%7
5779.3%35
5478.3%61
10778.1%19
377.6%62
4977.5%13
5976.7%67
9175.9%41
9575.3%51
10875.3%65
7072.5%21
472.5%21
672.5%93
572.5%81
871.4%66
8770.8%64
970.3%15
10170.1%81
7969.4%15
3566.2%83
10665.2%69
8464.9%93
3762.3%75
262.0%47
3160.1%99
2660.0%61
1759.8%23
6859.0%51
7758.8%35
1657.7%14
2957.0%32
1556.9%32
4756.8%8
8956.5%99
9856.3%14
3855.7%99
6654.4%30
2454.2%62
1053.0%99
3051.8%99
9351.6%99
5849.5%8
748.2%99
2048.2%99
9247.1%99
10545.1%78
1845.0%7
1344.4%99
10443.4%30
9443.3%99
8043.2%18
2743.0%84
7142.1%33
7340.1%99
2840.0%8
139.7%99
3438.6%18
7238.2%3
1138.0%18
3237.6%6
7537.2%20
9735.9%48
8135.7%26
3635.2%99
4234.8%99
9031.9%7
5529.4%99
6129.4%96
6028.8%99
4128.8%99
3328.6%1
1227.6%99
4027.5%99
6727.5%99
8627.4%99
5327.1%99
5624.8%99
9924.2%99
3923.7%99
6223.7%99
4623.0%99
5022.4%99
10222.4%97
4421.9%99
10021.8%99
4321.3%99
2320.9%99
6320.9%99
7619.5%99
1419.1%99
4819.1%99
019.1%99
7817.5%99
2516.8%99
6516.4%99