Commits

Author Commit Message Labels Comments Date
Anton Goloborodko
fragmentHiC.py: speed up plotScaling by a big factor, especially on a large number of regions
Anton Goloborodko
highResBinnedData.py: marginal error is 99.9th percentile instead of max() of the margin deviation from the mean
mimakaev
Fixed plotScaling; now plot labels are printed correctly.
mimakaev
Potentially fixed a serious bug in plotScaling which distorted scalings.
mimakaev
Removed some files
mimakaev
Minor changes to highResolution file
mimakaev
Pipeline to map data was somewhat rewritten to avoid confusions with the genome
mimakaev
2015 version of the pipeline added
mimakaev
Dummy commit
mimakaev
Close branch to avoid confusions
Branches
noSS
mimakaev
merge with noSS
mimakaev
closing test branch
Branches
test-mapping
mimakaev
splitting single fastq added
Branches
noSS
mimakaev
Changed error message of binary search
Branches
noSS
mimakaev
Merge with Anton
Branches
noSS
mimakaev
Merge with test-mapping
Branches
noSS
mimakaev
Potentially fixed a harmless error in sortData
Branches
test-mapping
mimakaev
Fragment-resolution heatmap added Likely fixed a bug in sorting data which did not really affect anything.
Branches
test-mapping
mimakaev
Bugfix in plotScaling
Branches
test-mapping
mimakaev
Many changes.
Branches
test-mapping
Anton Goloborodko
merge with test-mapping
Anton Goloborodko
make_sacCer3_gap.py: fix a bug introduced by the recent changes in the syntax of mirnylab.genome.createGapFile()
mimakaev
More refactoring. Added test of eigenvectors
Branches
test-mapping
mimakaev
Added autoflash to new methods of h5dict
Branches
test-mapping
mimakaev
Optimizations to fragmentSum
Branches
test-mapping
mimakaev
merge with myself
Branches
test-mapping
mimakaev
Memory optimization
Branches
test-mapping
mimakaev
Merge with myself
Branches
test-mapping
mimakaev
Changes to HiCManager
Branches
test-mapping
mimakaev
Some changes to fragmentHiC
Branches
test-mapping
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