Downloading/unpacking mpi4py Running setup.py (path:/tmp/pip_build_root/mpi4py/setup.py) egg_info for package mpi4py Installing collected packages: mpi4py Running setup.py install for mpi4py MPI configuration: [mpi] from 'mpi.cfg' checking for library 'pthread' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lpthread -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for library 'mpe' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lmpe -lpthread -o _configtest /bin/ld: cannot find -lmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'lmpe' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -llmpe -lpthread -o _configtest /bin/ld: cannot find -llmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'mpe' dylib library gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-mpe.c -o build/temp.linux-x86_64-2.7/src/pmpi-mpe.o src/pmpi-mpe.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "mpe" failed warning: build_clib: command 'gcc' failed with exit status 1 checking for library 'vt-mpi' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt-mpi -o _configtest /bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt.mpi -o _configtest /bin/ld: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt' dylib library gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-vt.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt.o src/pmpi-vt.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "vt" failed warning: build_clib: command 'gcc' failed with exit status 1 checking for library 'vt-mpi' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt-mpi -o _configtest /bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-vt-mpi.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt-mpi.o src/pmpi-vt-mpi.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "vt-mpi" failed warning: build_clib: command 'gcc' failed with exit status 1 checking for library 'vt-hyb' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt-hyb -o _configtest /bin/ld: cannot find -lvt-hyb collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-vt-hyb.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt-hyb.o src/pmpi-vt-hyb.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "vt-hyb" failed warning: build_clib: command 'gcc' failed with exit status 1 MPI configuration: [mpi] from 'mpi.cfg' checking for MPI compile and link ... checking for header 'mpi.h' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -I/usr/include/python2.7 -c _configtest.c -o _configtest.o _configtest.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. failure. removing: _configtest.c _configtest.o failure. error: Cannot find 'mpi.h' header. Check your configuration!!! Complete output from command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip_build_root/mpi4py/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-xv19Kw-record/install-record.txt --single-version-externally-managed --compile: running install running build running build_src running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/mpi4py copying src/rc.py -> build/lib.linux-x86_64-2.7/mpi4py copying src/__init__.py -> build/lib.linux-x86_64-2.7/mpi4py creating build/lib.linux-x86_64-2.7/mpi4py/include creating build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi_c.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/__init__.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/__init__.pyx -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py copying src/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py copying src/mpi_c.pxd -> build/lib.linux-x86_64-2.7/mpi4py running build_clib MPI configuration: [mpi] from 'mpi.cfg' checking for library 'pthread' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lpthread -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for library 'mpe' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lmpe -lpthread -o _configtest /bin/ld: cannot find -lmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'lmpe' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -llmpe -lpthread -o _configtest /bin/ld: cannot find -llmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/src gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-mpe.c -o build/temp.linux-x86_64-2.7/src/pmpi-mpe.o src/pmpi-mpe.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "mpe" failed warning: build_clib: command 'gcc' failed with exit status 1 checking for library 'vt-mpi' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt-mpi -o _configtest /bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt.mpi -o _configtest /bin/ld: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt' dylib library gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-vt.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt.o src/pmpi-vt.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "vt" failed warning: build_clib: command 'gcc' failed with exit status 1 checking for library 'vt-mpi' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt-mpi -o _configtest /bin/ld: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-vt-mpi.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt-mpi.o src/pmpi-vt-mpi.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "vt-mpi" failed warning: build_clib: command 'gcc' failed with exit status 1 checking for library 'vt-hyb' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c _configtest.c -o _configtest.o gcc _configtest.o -lvt-hyb -o _configtest /bin/ld: cannot find -lvt-hyb collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -c src/pmpi-vt-hyb.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt-hyb.o src/pmpi-vt-hyb.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. warning: build_clib: building library "vt-hyb" failed warning: build_clib: command 'gcc' failed with exit status 1 running build_ext MPI configuration: [mpi] from 'mpi.cfg' checking for MPI compile and link ... checking for header 'mpi.h' ... gcc -fPIC -fno-strict-aliasing -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -I/usr/include/python2.7 -c _configtest.c -o _configtest.o _configtest.c:2:17: fatal error: mpi.h: No such file or directory compilation terminated. failure. removing: _configtest.c _configtest.o failure. error: Cannot find 'mpi.h' header. Check your configuration!!! ---------------------------------------- Cleaning up... Command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip_build_root/mpi4py/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-xv19Kw-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip_build_root/mpi4py Storing debug log for failure in /home/emmanuel/.pip/pip.log