mroachawri / purge_haplotigs / issues

Title	T	P	Status	Created	Updated
#184: Very fragmented reassigned contigs real signal?	proposal	major	resolved	2024-08-29	2024-10-30
#165: How to decide coverage cutoff in the very duplicated busco assembly (tetraploid)?	proposal	major	resolved	2023-08-14	2024-02-08
#129: Single peak Histogram	proposal	major	resolved	2022-11-21	2024-02-08
#124: Supplementary alignments	proposal	major	resolved	2022-08-01	2024-02-08
#133: Hope for some suggestions for parameters -l -m -h from my histogram.	proposal	critical	closed	2023-02-26	2023-03-09
#84: Running purge_haplotigs with purge_haplotigs result(like curated.fasta)	proposal	minor	resolved	2021-03-09	2021-07-12
#53: Improving purging?	proposal	minor	resolved	2020-01-07	2020-02-20
#35: choose right cut-off values in read depth histogram	proposal	minor	resolved	2019-09-02	2019-09-29
#33: How to assess the quality of the result	proposal	major	resolved	2019-08-07	2019-09-29
#27: read depth calculation changed from bedtools to samtools	proposal	major	resolved	2019-04-17	2019-09-29
#5: cutoff for step2 for one-peak assemblies	proposal	minor	resolved	2018-03-25	2018-08-06
#1: also a-ctgs in input?	proposal	major	resolved	2017-05-08	2017-08-31

#184: Very fragmented reassigned contigs real signal?

proposal

major

resolved

2024-08-29

2024-10-30

#165: How to decide coverage cutoff in the very duplicated busco assembly (tetraploid)?

proposal

major

resolved

2023-08-14

2024-02-08

#129: Single peak Histogram

proposal

major

resolved

2022-11-21

2024-02-08

#124: Supplementary alignments

proposal

major

resolved

2022-08-01

2024-02-08

#133: Hope for some suggestions for parameters -l -m -h from my histogram.

proposal

critical

closed

2023-02-26

2023-03-09

#84: Running purge_haplotigs with purge_haplotigs result(like curated.fasta)

proposal

minor

resolved

2021-03-09

2021-07-12

#53: Improving purging?

proposal

minor

resolved

2020-01-07

2020-02-20

#35: choose right cut-off values in read depth histogram

proposal

minor

resolved

2019-09-02

2019-09-29

#33: How to assess the quality of the result

proposal

major

resolved

2019-08-07

2019-09-29

#27: read depth calculation changed from bedtools to samtools

proposal

major

resolved

2019-04-17

2019-09-29

#5: cutoff for step2 for one-peak assemblies

proposal

minor

resolved

2018-03-25

2018-08-06

#1: also a-ctgs in input?

proposal

major

resolved

2017-05-08

2017-08-31

Issues

Issues (1–12 of 12)