1. Michael Roach Avatar Michael Roach
  2. Untitled project
  3. purge_haplotigs

Issues

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Issues (101–125 of 163)

Title T P Status Votes Assignee Created Updated Actions
#62: Mapping short reads to produce BAM & dot plot issue
bug major resolved
#59: run with HiC data
task minor resolved
#57: Few reads with high coverage on Rplot?
bug minor resolved
#55: curated.fasta smaller than predicted
bug major resolved
#51: No change after purge haplotigs. How to remove the contigs might have same region in haplotigs?
bug major resolved
#47: Missing lastz data
bug major resolved
#45: Single peak, high duplication
task major resolved
#67: Tetraploid assembly
task major resolved
#32: purge_haplotigs hist frozen illumina / 10x asseembly?
bug major resolved
#65: samtools index and purge_haplotigs purge
task major resolved
#63: What could explain three peaks in the histogram?
bug minor resolved
#61: Lots of Reads Low/No Coverage
bug major resolved
#60: Lower Busco
task major resolved
#56: One peak histogram
task major resolved
#50: Pipeline failure in purge_haplotig hist
bug major resolved
#54: pipeline fails when fasta header is a number
bug major resolved
#53: Improving purging?
proposal minor resolved
#49: Small peak at half coverage
task major resolved
#48: How to understand the step one plot have two peak and how to give the depth cut off value of step two?
enhancement major resolved
#46: different result from corrected and raw nanopore data
bug major resolved
#44: unusual histogram result
task major resolved
#43: Contigcov cutoff selection
bug major resolved
#40: Contigcov cutoff selection
task major resolved
#38: How did you make the dotplot on the wiki examples page?
task minor resolved
#26: Error 1, maybe something wrong with Perl
bug major resolved
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