1. Michael Roach Avatar Michael Roach
  2. Untitled project
  3. purge_haplotigs

Issues

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Issues (101–120 of 120)

Title T P Status Votes Assignee Created Updated Actions
#27: read depth calculation changed from bedtools to samtools
proposal major resolved
#25: no diploid peak
bug major resolved
#30: Purge haplotigs run on scaffolds
task major resolved
#24: purge_haplotigs test issues
bug major resolved
#23: Possible pipeline modification
enhancement major resolved
#21: max coverage
enhancement major resolved
#19: reference genome: masked?
task major resolved
#29: purge issue with samtools faidx file
bug major resolved
#28: purge_haplotigs with XY species
task major resolved
#17: Rscript PNG file creation without X11
enhancement major resolved
#16: Residual haplotigs
enhancement major resolved
#18: purge step fail
bug major resolved
#12: lastz failed in purge step
bug major resolved
#4: purge_haplotigs purge failed
task major resolved
#7: use raw, corrected or trimmed reads?
task major resolved
#14: Sporadic crashing during pariwise comparisons
bug major resolved
#11: issue with fasta headers printed in purge.pl output
bug major resolved
#3: different CIGAR format?
bug major resolved
#2: could not parse delta file
bug major resolved
#1: also a-ctgs in input?
proposal major resolved
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