Mcc

adding skeleton for MCC

• basic optimization for faster runtime and smaller memory footprint

MCC basic code

.gitignore

introduce verbose parameter, used for foreach troubleshooting for now

.gitignore

Revert "introduce verbose parameter, used for foreach troubleshooting for now"

This reverts commit 8a3adf4d95d4db228cf8adf75118ce1032fa8c17.

introduce verbose parameter

introduce verbose parameter

roxygenised

adding Histdf data

basic MCC detection working

Integrated MCC detection into rawcopy, first working version

resume = T also skipping segmentation if output files are present

draw lines for expected log R for calculated MCC

rawcopy.rescueMCC implemented: just give it two cel files and get your corrected qc plot out

man page for rawcopy.rescueMCC

Bumping up the version