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SynBad - A RDF-based genetic design framework

Installation instructions

  1. Install Newcastle University JARs
  2. Install COPASI JAR

Newcastle JARs

JARs are provided in the dependencies folder, and can be installed on *nix systems by running install-dependencies.sh in the same directory.

Otherwise, the commands in the script can be used to install the JARs on Windows.

COPASI JARs

Download the Java Language Bindings for your platform at http://copasi.org/Download. Synbad currently used version 4.16.104. Install using the command below.

mvn install:install-file -Dfile=copasi.jar -DgroupId=org.copasi -DartifactId=copasi -Dversion=4.16.104 -Dpackaging=jar