Commits

Author Commit Message Labels Comments Date
Sarah Richardson
this is a prereq that I forgot to report
Sarah Richardson
start actually implementing Postgres backend
Sarah Richardson
the parameters have to match the DBI engine key; Pg not pg
Sarah Richardson
there's no .pl when bioperl is installed on debian by synaptic
Sarah Richardson
The postgre adaptor is Pg not pg
Sarah Richardson
wrong number of tests
Sarah Richardson
Add a CRISPR genome excision tool - Toaster
Sarah Richardson
Some BLAST warnings and adjustments
Sarah Richardson
documentation spacing adjustment
Sarah Richardson
Adding a BLAST library- currently makes a BLAST database in the genome_repo containing the latest versions of every chromosome
Sarah Richardson
changes to make novel installs smoother
Sarah Richardson
begin cutter cleanup
Sarah Richardson
going Gold
Sarah Richardson
test exception for duplicate names
Sarah Richardson
POD error
Sarah Richardson
change scale to iterate; make sure the chr->iterate call obeys it!
Sarah Richardson
a bit of a hack - no more gff strings ending in semi colons. This whole function should be revisited though
Sarah Richardson
watch for unique names
Sarah Richardson
Add a running To Do list
Sarah Richardson
Repeat Smasher going gold
Sarah Richardson
Splicer going gold
Sarah Richardson
Analyzer going gold
Sarah Richardson
index is a reserved word
Sarah Richardson
criticisms
Sarah Richardson
Update container when deleting or inserting features. Make sure, when creating new features, that the names don't conflict with existing features. Add default comments.
Sarah Richardson
the mask needs to lengthen and contract the length attribute when things are added or removed!
Sarah Richardson
the test chromosome should have a container feature
Sarah Richardson
add the new RE kind to cartoonist
Sarah Richardson
Changing the way custom features are stored and used
Sarah Richardson
Going gold
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