Source

BioStudio-dev / MANIFEST

Full commit
bin/BS_AddFromGenbank.pl
bin/BS_AddFromGFF.pl
bin/BS_auto_codon_juggle.pl
bin/BS_auto_filter_enzymes.pl
bin/BS_auto_gather_enzymes.pl
bin/BS_auto_tag_genes.pl
bin/BS_Cartoonist.pl
bin/BS_ChromosomeAnalyzer.pl
bin/BS_ChromosomeCutter.pl
bin/BS_ChromosomeDiff.pl
bin/BS_ChromosomeSegmenter.pl
bin/BS_ChromosomeSplicer.pl
bin/BS_CodonJuggler.pl
bin/BS_FirstGBrowse.pl
bin/BS_PCRTagDumper.pl
bin/BS_PCRTagger.pl
bin/BS_RepeatSmasher.pl
bin/BS_SeqChecker.pl
Build.PL
cairo/Armata-Regular.otf
cairo/Armata_license.txt
cairo/Aurulent_license.txt
cairo/AurulentSansMono-Regular.otf
cairo/Bree_license.txt
cairo/BreeSerif-Regular.otf
cairo/Cairo_colors.yaml
cairo/Inconsolata.otf
cairo/Inconsolata_license.txt
cairo/Pecita.otf
cairo/Pecita_license.txt
cairo/Verily_license.txt
cairo/VerilySerifMono.otf
Changes
features/loxPsym.fasta
features/rox.fasta
features/universal_telomere_cap_left.fasta
features/universal_telomere_cap_right.fasta
foswiki/WebAtom.txt
foswiki/WebChanges.txt
foswiki/WebCreateNewTopic.txt
foswiki/WebHome.txt
foswiki/WebIndex.txt
foswiki/WebLeftBar.txt
foswiki/WebNotify.txt
foswiki/WebPreferences.txt
foswiki/WebRss.txt
foswiki/WebSearch.txt
foswiki/WebSearchAdvanced.txt
foswiki/WebStatistics.txt
foswiki/WebTopicList.txt
gbrowse/BS_GBrowse_chromosome.conf
gbrowse/conf_repository/repository_README.txt
gbrowse/GBrowse_colors.yaml
gbrowse_plugins/BS_Cartoonist.pm
gbrowse_plugins/BS_ChromosomeAnalyzer.pm
gbrowse_plugins/BS_ChromosomeCutter.pm
gbrowse_plugins/BS_ChromosomeDiff.pm
gbrowse_plugins/BS_ChromosomeSegmenter.pm
gbrowse_plugins/BS_ChromosomeSplicer.pm
gbrowse_plugins/BS_CodonJuggler.pm
gbrowse_plugins/BS_PCRTagDumper.pm
gbrowse_plugins/BS_PCRTagger.pm
gbrowse_plugins/BS_RepeatSmasher.pm
genome_repository/Escherichia_coli/chr01/Escherichia_coli_chr01_0_00.gff
genome_repository/repository_README.txt
ignore.txt
install_util/BioStudioInstall.pm
lib/Bio/BioStudio.pm
lib/Bio/BioStudio/Analyze/ArbitraryFeatures.pm
lib/Bio/BioStudio/Analyze/ProteinCodingGenes.pm
lib/Bio/BioStudio/Analyze/RestrictionEnzymes.pm
lib/Bio/BioStudio/Cairo.pm
lib/Bio/BioStudio/Chromosome.pm
lib/Bio/BioStudio/Chunk.pm
lib/Bio/BioStudio/CodonJuggling.pm
lib/Bio/BioStudio/DB.pm
lib/Bio/BioStudio/Diff.pm
lib/Bio/BioStudio/Diff/Difference.pm
lib/Bio/BioStudio/Exceptions.pm
lib/Bio/BioStudio/Foswiki.pm
lib/Bio/BioStudio/GBrowse.pm
lib/Bio/BioStudio/Git.pm
lib/Bio/BioStudio/Marker.pm
lib/Bio/BioStudio/Mask.pm
lib/Bio/BioStudio/Megachunk.pm
lib/Bio/BioStudio/PCRTagging.pm
lib/Bio/BioStudio/Repository.pm
lib/Bio/BioStudio/RestrictionEnzyme.pm
lib/Bio/BioStudio/RestrictionEnzyme/Seek.pm
lib/Bio/BioStudio/RestrictionEnzyme/Store.pm
lib/Bio/BioStudio/SeqFeature/Amplicon.pm
lib/Bio/BioStudio/SeqFeature/CDSVariant.pm
lib/Bio/BioStudio/SeqFeature/Codon.pm
lib/Bio/BioStudio/SeqFeature/Chunk.pm
lib/Bio/BioStudio/SeqFeature/Custom.pm
lib/Bio/BioStudio/SeqFeature/Megachunk.pm
lib/Bio/BioStudio/SeqFeature/ProposedDeletion.pm
lib/Bio/BioStudio/SeqFeature/RestrictionSite.pm
lib/Bio/BioStudio/SeqFeature/Tag.pm
MANIFEST			This list of files
markers/LEU2.gff
markers/URA3.gff
META.json
META.yml
README
t/00-load.t
t/15-chromosome.t
t/20-edit.t
t/25-annotate.t
t/boilerplate.t
t/manifest.t
t/pod-coverage.t
t/pod.t
t/test_repo/Escherichia_coli/chr01/Escherichia_coli_chr01_0_00.gff