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Bio::CloneQC

ABOUT

It's about automating the analysis of Sanger sequencing reads.

INSTALLATION

To install this module, run the following commands:

	perl Build.PL
	
Answer the following questions (may differ based on your system, [defaults]):

	Where should scripts be installed? [ /usr/local/bin ] 
	Where should CloneQC write tmp files? [ /tmp ] 

Then run the following:

	./Build
	./Build test
	./Build install

Then enjoy CloneQC.


COPYRIGHT AND LICENSE

Copyright (c) 2013, CloneQC developers
All rights reserved.

Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice, this
list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.

* The names of Johns Hopkins, the Joint Genome Institute, the Lawrence Berkeley
National Laboratory, the Department of Energy, and the GeneDesign developers may
not be used to endorse or promote products derived from this software without
specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE DEVELOPERS BE LIABLE FOR ANY DIRECT, INDIRECT,
INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Recent activity

Sarah Richardson

Sarah Richardson pushed 3 commits to notadoctor/CloneQC_multi

860ee11 - date changes and whitespace
83a0422 - If you find a reference sequence that regexes to the read, use that one, regardless of whether or not there is a better one
205d997 - If 5' trimming trims the whole sequence, don't bother trimming from the 3' end!
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