1. Sarah Richardson
  2. GeneDesign-dev

Commits

Sarah Richardson  committed a956677

a brief debugging interlude

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  • Parent commits 374cfc8
  • Branches master

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Files changed (1)

File lib/Bio/GeneDesign/Vmatch.pm

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  • Ignore whitespace
   my $sbe = Bio::Grep->new('Vmatch');
   $sbe->settings->datapath($writedir);
   $sbe->generate_database({ file => $dbpath, description => $parent->id});
-    
+  print "GD has generated the database $dbpath and will now run vmatch on $datapath.\n";
   #Run vmatch on everything in the array
   $sbe->search
   ({
     direct_and_rev_com  => 1,
     online              => 1}
   );
+  print "GD has vmatched.\n";
   my %hits = map {$_->id => 0} @$seqarrs;
   while ( my $res = $sbe->next_res )
   {