Commits

Sarah Richardson  committed af3a928

updated cron script for gene design install on genepool

  • Participants
  • Parent commits 2349420

Comments (0)

Files changed (1)

 #!/bin/bash -l
 # running on genepool02 as gpinterp user
 module load perl
-module load blast+
-module load EMBOSS
-module load vmatch
-module load genedesign
 
 cd /usr/common/jgi/synthbio/genedesign-dev
 git pull
 
-perl Build.PL --conf_path /usr/common/jgi/synthbio/etc/GeneDesign --script_path /usr/common/jgi/synthbio/GeneDesign/bin --tmp-path $TMPDIR --graphing_support Y --EMBOSS_support Y --vmatch_support Y --like_last_time
+./Build clean
+
+perl Build.PL --conf_path /usr/common/jgi/synthbio/etc/GeneDesign --script_path /usr/common/jgi/synthbio/GeneDesign/bin --tmp-path $TMPDIR --graphing_support Y
 ./Build
 ./Build test
 ./Build install