Commits

Author Commit Message Labels Comments Date
Sarah Richardson
v5.53 for GeneDesignServer compatibility
Sarah Richardson
update for changed RSCU tables
Sarah Richardson
add listing functions for algorithms
Sarah Richardson
Happy new year
Sarah Richardson
don't trouble standard orgs
Sarah Richardson
Clean up the RSCU tables
Sarah Richardson
Call it Unbiased, not Flat
Sarah Richardson
non zero stop codons prevent use
Sarah Richardson
Update rscu table names; correct lack of output path in Codon Juggle
Sarah Richardson
Add equidistant probe for human stop codons
Sarah Richardson
Added a listing script that will tell you what rscu tables are known and what directory they are in. Also switched warnings about standard codon usage - now a warning is only issued if you're using a non standard codon table.
Sarah Richardson
remove Eco31I from the specialized enzyme lists
Sarah Richardson
and the metas
Sarah Richardson
v 5.52
Sarah Richardson
to fix fails during testing when GeneDesign has never been installed
Sarah Richardson
v5.51
Sarah Richardson
a more accurate README
Sarah Richardson
removing traces of DNAssemble
Sarah Richardson
moved to new package
Sarah Richardson
Version 5.5: No segmentation
Sarah Richardson
remember to import the proper packages
Sarah Richardson
Remove segmentation functions from gene design
Sarah Richardson
non NEB buffers are a headache
Sarah Richardson
it wasn't vmatches fault
Sarah Richardson
a brief debugging interlude
Sarah Richardson
tests for new count function
Sarah Richardson
Add length attribute to count function. Add sanitize function to strip non nucleotide or non amino acid characters from input. Add special function to cleanly rewrite genbank features that span multiple lines.
Sarah Richardson
homopolymer subroutines
Sarah Richardson
better oligo fails
Sarah Richardson
add interface for dotplotting
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