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opticall  committed 23e3484

format and spelling fies

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  • Parent commits b8bccd5

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                 <p class="lead">
                 uncompress the downloaded file by running:
                 </p>
-                <pre>tar xvzf &lt;filename&gt;</pre>
+                <pre>tar -xvzf &lt;filename&gt;</pre>
                 <p class="lead">
                 which creates a folder of the same name as filename. cd into the optiCall folder:
                 </p>
             <div class="row-fluid">
                 <div class="span4" >
                     <img src="opticallinputfileview.png"  />
-                    <em>An example input file</em>
+                    <div><em>An example input file</em></div>
                 </div>
                 <div class="span8" >
                     <a id="input-file-desc"></a>
             <div class="row-fluid">
                 <div class="span4" >
                     <img src="opticallcallfileview.png"  />
-                    <em>An example .calls file</em>
+                    <div><em>An example .calls file</em></div>
                     <br /><br />
                     <img src="opticallprobsfileview.png"  />
-                    <em>An example .probs file</em>                
+                    <div><em>An example .probs file</em></div>                
                 </div>
                 <div class="span8" >
                     <h4>
             <div class="row-fluid">
                 <div class="span4" >
                     <img src="nointcutoff.png"  />
-                    <em>the effect of -nointcutoff for mixture model inference</em>
+                    <div><em>the effect of -nointcutoff for mixture model inference</em></div>
                 </div>
                 <div class="span8" >
                     <h4>
             <div class="row-fluid">
                 <div class="span4" >
                     <img src="meanintfilter.png"  />
-                    <em>the effect of -meanintfilter for calling</em>
+                    <div><em>the effect of -meanintfilter for calling</em></div>
                 </div>
                 <div class="span8" >
                     <h4>
             <div class="row-fluid">
                 <div class="span4" >
                     <img src="blankdesc.png"  />
-                    <em>the effect of -blank for SNPs out of HWE</em>
+                    <div><em>the effect of -blank for SNPs out of HWE</em></div>
                 </div>
                 <div class="span8" >
                     <h4>
                         -X, -Y &amp; -MT
                     </h4>
                     <p class="lead">
-                        Use these options when calling intensity files for X chromosome, Y chromosome and Mitochondrial SNPS respectively.
+                        Use these options when calling intensity files for X chromosome, Y chromosome and mitochondrial SNPs respectively.
                     </p>
                     <p class="lead">
                         For X and Y chromosomes the best calls are achieved by also using the <strong>-info</strong> option and supplying gender information for samples.
                         Multiple Chromosomes
                     </h4>
                     <p class="lead">
-                        We recommend chunking the input data into separate intensity files for each chromosome (each one in the format <a href="#input-file-desc">here</a>), and calling each chunk separately in parallel on a different processing node to significantly reduce execution time. For X, Y and MT files use the -X, -Y &amp; -MT flags respectively.
+                        We recommend chunking the input data into separate intensity files for each chromosome (each one in the format <a href="#input-file-desc">here</a>), and calling each chunk separately in parallel on a different processing node to significantly reduce execution time. For X, Y and mitochondrial files use the -X, -Y &amp; -MT flags respectively.
                     </p>
                 </div>
             </div>