KeyError: 'E00576:120:HGJFMCCXY:4:1103:23937:69607'

[Former user]

Hi, My command is: seqclust --tarean_mode --cpu 16 --output_dir /mnt/isilon/wang_lab/fangli/projects/fish_10x/repeat_analysis/repeat_explorer/quick_test_10k_reads --keep_names /mnt/isilon/wang_lab/fangli/projects/fish_10x/repeat_analysis/repeat_explorer/fasta/quick_test_10k_reads.fasta

After a few minutes, I have this error:

2018-06-28 14:29:12,944 - lib.seqtools - INFO - saving chunk /mnt/isilon/wang_lab/fangli/projects/fish_10x/repeat_analysis/repeat_explorer/quick_test_10k_reads/seqclust/sequences/sequences.fasta.40

2018-06-28 14:29:12,945 - lib.seqtools - INFO - running all to all blast

running in parallel using 16 cpu(s)

2018-06-28 14:29:13,812 - lib.seqtools - INFO - all to all blast finished

2018-06-28 14:29:13,812 - lib.seqtools - INFO - removing duplicates from all to all blast results

2018-06-28 14:29:13,863 - main - INFO - copy databases to working directory

Traceback (most recent call last): File "/mnt/isilon/wang_lab/fangli/software/repex_tarean/seqclust", line 632, in main sequences.create_hitsort(output=paths.hitsort, options=args.options) File "/mnt/isilon/wang_lab/fangli/software/repex_tarean/lib/seqtools.py", line 581, in create_hitsort hitsort_files=output_parts, filtered_hitsort=output) File "/mnt/isilon/wang_lab/fangli/software/repex_tarean/lib/seqtools.py", line 619, in _clean_hitsort ids_destination[min(line_items[0:2])].write(line) KeyError: 'E00576:120:HGJFMCCXY:4:1103:23937:69607'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/mnt/isilon/wang_lab/fangli/software/repex_tarean/seqclust", line 763, in <module> main() File "/mnt/isilon/wang_lab/fangli/software/repex_tarean/seqclust", line 756, in main shutil.copy(paths.hitsort_db, paths.working_dir) File "/home/fangl/anaconda2/envs/py34/lib/python3.4/shutil.py", line 229, in copy copyfile(src, dst, follow_symlinks=follow_symlinks) File "/home/fangl/anaconda2/envs/py34/lib/python3.4/shutil.py", line 108, in copyfile with open(src, 'rb') as fsrc: FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmp7mt4wqpa/hitsort.db' Shutting down Rserv...Done

Can you please kindly help?