1. Petr Novak Avatar Petr Novak
  2. RepeatExplorer
  3. repex_tarean

Issues

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Issues (51–75 of 78)

Title T P Status Votes Assignee Created Updated Actions
#20: optimize memory usage
enhancement major resolved
#29: remove -task rmblastn from seqtools.py
bug major wontfix
#35: in max_mem and cpu not set check envir variables befar setting to default
enhancement major resolved
#31: make merging of clusters based on pair mates optional
enhancement major resolved
#32: running two jobs at one node - problems with Rserve interference
bug major resolved
#33: set minimal size of clusters for mergin
enhancement major resolved
#22: ORF reporting in tarean mode
enhancement major resolved
#30: add index of sequence names
enhancement major new
#25: limit memory usage during dna_database annotation
bug critical invalid
#28: for large clusters sample blast.csv before using in R
enhancement critical resolved
#24: handle cases if not satellited is found(pass threshold)
bug critical resolved
#18: make html report output for tarean batch mode
enhancement minor new
#21: Improve HTML output
bug major resolved
#23: rDNA reporting in tarean mode
enhancement major resolved
#14: make whole pipeline reproducible
enhancement major resolved
#17: improve PBS detection
enhancement major resolved
#1: check if make was run
proposal minor resolved
#13: pbs sites detection
enhancement major resolved
#16: adjust range of kmer calculation
proposal major new
#15: set some coverage threshold monomer reporting in tarean
enhancement major new
#7: add option to set size of sample for input sequences
proposal minor resolved
#4: Rserve - make new server instance for each run
enhancement minor resolved
#11: add layout calculation for reads graph+export png - include paralelization!!
enhancement major resolved
#10: use config as singleton object to store global options
proposal major resolved
#9: make better locations of modules
proposal minor resolved
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